Skip to content
@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

Pinned Loading

  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 163 32

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 83 25

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 102 29

  4. Hotspot Hotspot Public

    Python 97 14

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

Repositories

Showing 10 of 62 repositories
  • Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    YosefLab/Compass’s past year of commit activity
    Python 102 BSD-3-Clause 29 50 2 Updated Jan 10, 2025
  • yoseflab.github.io Public
    YosefLab/yoseflab.github.io’s past year of commit activity
    JavaScript 3 MIT 9 0 0 Updated Jan 10, 2025
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 2 BSD-3-Clause 2 0 0 Updated Jan 6, 2025
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 39 BSD-3-Clause 7 8 2 Updated Jan 6, 2025
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 53 BSD-3-Clause 12 11 4 Updated Jan 6, 2025
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 63 MIT 11 3 2 Updated Jan 6, 2025
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    YosefLab/Cassiopeia’s past year of commit activity
    Python 83 MIT 25 21 (3 issues need help) 7 Updated Jan 2, 2025
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 14, 2024
  • scvi-hub-reproducibility Public

    Reproducibility of results/figures from scvi-hub paper

    YosefLab/scvi-hub-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2024
  • scvi-hub-models Public

    Reproducibility workflows for pre-trained scvi-tools models on Hugging Face

    YosefLab/scvi-hub-models’s past year of commit activity
    Jupyter Notebook 0 MIT 1 1 0 Updated Dec 13, 2024
View all repositories

Most used topics

Loading…