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Does compass better separating the anndata by cell type? #121

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giuliaelgarcia opened this issue Dec 10, 2024 · 0 comments
Open

Does compass better separating the anndata by cell type? #121

giuliaelgarcia opened this issue Dec 10, 2024 · 0 comments

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@giuliaelgarcia
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Hi, I was wondering if the best way to run compass is by cell type, if that makes a difference in the outcome? Or if all cell types can be in one anndata object specially for the first part?
Thanks!!
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