Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Plotting utils #26

Open
PierreBoyeau opened this issue Jan 10, 2023 · 0 comments
Open

Plotting utils #26

PierreBoyeau opened this issue Jan 10, 2023 · 0 comments

Comments

@PierreBoyeau
Copy link
Collaborator

We should include plotting utils for the various experiments, that include

  • Visualization of the distance matrices: Takes an xarray matrix (cell-type x sample x sample), and optional sample annotations, and plot heatmaps with dendrograms (1 per cell-type).
  • SCIB / clustering metrics: using Adam's work.
  • UMAP/TSNE plots: takes 2d representation and cell metadata, and produce as many plots as there are metadata.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@PierreBoyeau