Skip to content

Commit

Permalink
use _PACKAGE to document package manpage
Browse files Browse the repository at this point in the history
  • Loading branch information
GuangchuangYu committed Feb 5, 2024
1 parent 2c2d172 commit ab3fae7
Show file tree
Hide file tree
Showing 4 changed files with 20 additions and 35 deletions.
2 changes: 1 addition & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -41,5 +41,5 @@ BugReports: https://github.com/GuangchuangYu/ReactomePA/issues
Packaged: 2012-03-05 18:26:53 UTC; mcarlson
biocViews: Pathways, Visualization, Annotation, MultipleComparison,
GeneSetEnrichment, Reactome
RoxygenNote: 7.2.1
RoxygenNote: 7.3.0
Encoding: UTF-8
21 changes: 2 additions & 19 deletions R/ReactomePA-package.R
Original file line number Diff line number Diff line change
@@ -1,22 +1,5 @@
#' Reactome Pathway Analysis
#'
#' This package is designed for reactome pathway analysis.
#'
#' \tabular{ll}{ Package: \tab ReactomePA\cr Type: \tab Package\cr
#' Version: \tab 1.9.4\cr Date: \tab 02-09-2012\cr biocViews:\tab
#' Bioinformatics, Pathway, Visulization\cr Depends:\tab AnnotationDbi, org.Hs.eg.db,
#' igraph, plyr, methods, stats, qvalue, reactome.db\cr Suggests:\tab GOSemSim, DOSE,
#' clusterProfiler\cr License: \tab GPL-2\cr }
#'
#' @name ReactomePA-package
#' @aliases ReactomePA-package ReactomePA
#' @docType package
#' @author Guangchuang Yu \email{guangchuangyu@@gmail.com}
#'
#' Maintainer: Guangchuang Yu \email{guangchuangyu@@gmail.com}
#' @seealso \linkS4class{enrichResult}
#' @keywords package
NULL
#' @keywords internal
"_PACKAGE"


#' Datasets
Expand Down
2 changes: 1 addition & 1 deletion R/viewPathway.R
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
##' @importFrom graphite pathwayGraph
##' @importFrom igraph igraph.from.graphNEL
##' @importFrom igraph as.undirected
##' @importFrom igraph "V<-"
##' @importFrom igraph V<-
##' @importFrom DOSE EXTID2NAME
##' @importFrom ggraph ggraph
##' @importFrom ggraph geom_edge_link
Expand Down
30 changes: 16 additions & 14 deletions man/ReactomePA-package.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

0 comments on commit ab3fae7

Please sign in to comment.