Update project lockfiles and pre-commit setup

.pre-commit-config.yaml

@@ -12,37 +12,41 @@ repos:
       - id: end-of-file-fixer
       - id: mixed-line-ending
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.1
+    rev: v1.11.2
     hooks:
       # See https://github.com/pre-commit/mirrors-mypy/blob/main/.pre-commit-hooks.yaml
       - id: mypy
         types_or: [python, pyi]
         args: [--ignore-missing-imports, --scripts-are-modules]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.5.2
+    rev: v0.6.8
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
       - id: ruff-format
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.7.9
+    rev: 1.7.10
     hooks:
       - id: bandit
         args: [-c, pyproject.toml]
         additional_dependencies: ["bandit[toml]"]
-  - repo: https://github.com/jsh9/pydoclint
-    rev: 0.5.6
-    hooks:
-      - id: pydoclint
-        args: [--check-class-attributes=False]
+#   Disabled due to incompatibility with our exception translator facility.
+#   See https://github.com/jsh9/pydoclint/issues/174
+#   TODO(nicholasjng): Re-enable once fixed or an ignore facility is available.
+#  - repo: https://github.com/jsh9/pydoclint
+#    rev: 0.5.9
+#    hooks:
+#      - id: pydoclint
+#        args: [--check-class-attributes=False]
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.2.25
+    rev: 0.4.17
     hooks:
       - id: pip-compile
         name: pip-compile requirements-dev.txt
         args:
           - --no-annotate
           - --no-strip-extras
+          - --python-version=3.9
           - --extra=dev
           - --output-file=requirements-dev.txt
           - pyproject.toml
@@ -52,6 +56,7 @@ repos:
         args:
           - --no-annotate
           - --no-strip-extras
+          - --python-version=3.9
           - --extra=docs
           - --output-file=requirements-docs.txt
           - pyproject.toml

hack/lock-deps.sh

@@ -1,7 +1,7 @@
 #!/bin/bash -ex
 
 INFILE=pyproject.toml
-COMMON_OPTIONS=(--no-annotate --no-strip-extras)
+COMMON_OPTIONS=(--no-annotate --no-strip-extras --python-version="3.9")
 
 # Treat positional arguments as packages to be upgraded
 while [[ $# -gt 0 ]]; do

requirements-dev.txt

@@ -1,40 +1,44 @@
 # This file was autogenerated by uv via the following command:
-#    uv pip compile --no-annotate --no-strip-extras --extra=dev --output-file=requirements-dev.txt pyproject.toml
+#    uv pip compile --no-annotate --no-strip-extras --python-version=3.9 --extra=dev --output-file=requirements-dev.txt pyproject.toml
 aenum==3.1.15
 annotated-types==0.7.0
-build==1.2.1
+build==1.2.2
 cfgv==3.4.0
 click==8.1.7
-coverage[toml]==7.6.0
+coverage[toml]==7.6.1
 distlib==0.3.8
 docstring-parser-fork==0.0.9
 duckdb==0.10.0
-filelock==3.15.4
-fsspec==2024.6.1
-identify==2.6.0
+exceptiongroup==1.2.2
+filelock==3.16.1
+fsspec==2024.9.0
+identify==2.6.1
+importlib-metadata==8.5.0
 iniconfig==2.0.0
-lakefs==0.7.0
-lakefs-sdk==1.29.0
+lakefs==0.7.1
+lakefs-sdk==1.36.0
 nodeenv==1.9.1
-numpy==2.0.0
+numpy==2.0.2
 packaging==24.1
-pandas[parquet]==2.2.2
-platformdirs==4.2.2
+pandas[parquet]==2.2.3
+platformdirs==4.3.6
 pluggy==1.5.0
-polars==1.2.0
-pre-commit==3.7.1
+polars==1.8.2
+pre-commit==3.8.0
 pyarrow==17.0.0
-pydantic==2.8.2
-pydantic-core==2.20.1
-pydoclint==0.5.5
-pyproject-hooks==1.1.0
-pytest==8.2.2
+pydantic==2.9.2
+pydantic-core==2.23.4
+pydoclint==0.5.9
+pyproject-hooks==1.2.0
+pytest==8.3.3
 pytest-cov==5.0.0
 python-dateutil==2.9.0.post0
-pytz==2024.1
-pyyaml==6.0.1
+pytz==2024.2
+pyyaml==6.0.2
 six==1.16.0
+tomli==2.0.1
 typing-extensions==4.12.2
-tzdata==2024.1
+tzdata==2024.2
 urllib3==2.0.7
-virtualenv==20.26.3
+virtualenv==20.26.6
+zipp==3.20.2

requirements-docs.txt

@@ -1,155 +1,155 @@
 # This file was autogenerated by uv via the following command:
-#    uv pip compile --no-annotate --no-strip-extras --extra=docs --output-file=requirements-docs.txt pyproject.toml
+#    uv pip compile --no-annotate --no-strip-extras --python-version=3.9 --extra=docs --output-file=requirements-docs.txt pyproject.toml
 aenum==3.1.15
 annotated-types==0.7.0
-anyio==4.4.0
+anyio==4.6.0
 appnope==0.1.4
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.3.0
 asttokens==2.4.1
 async-lru==2.0.4
-attrs==23.2.0
-babel==2.15.0
+attrs==24.2.0
+babel==2.16.0
 beautifulsoup4==4.12.3
-black==24.4.2
+black==24.8.0
 bleach==6.1.0
-certifi==2024.7.4
-cffi==1.16.0
+certifi==2024.8.30
+cffi==1.17.1
 charset-normalizer==3.3.2
 click==8.1.7
 colorama==0.4.6
 comm==0.2.2
-debugpy==1.8.2
+debugpy==1.8.6
 decorator==5.1.1
 defusedxml==0.7.1
 docstring-parser==0.16
 essentials==1.1.5
 essentials-openapi==1.0.9
-executing==2.0.1
+exceptiongroup==1.2.2
+executing==2.1.0
 fastjsonschema==2.20.0
 fqdn==1.5.1
-fsspec==2024.6.1
+fsspec==2024.9.0
 ghp-import==2.1.0
 gitdb==4.0.11
 gitpython==3.1.43
-griffe==0.48.0
+griffe==1.3.1
 h11==0.14.0
 httpcore==1.0.5
-httpx==0.27.0
-idna==3.7
-importlib-metadata==8.0.0
-importlib-resources==6.4.0
+httpx==0.27.2
+idna==3.10
+importlib-metadata==8.5.0
+importlib-resources==6.4.5
 ipykernel==6.29.5
-ipython==8.26.0
-ipywidgets==8.1.3
+ipython==8.18.1
+ipywidgets==8.1.5
 isoduration==20.11.0
 jedi==0.19.1
 jinja2==3.1.4
 json5==0.9.25
 jsonpointer==3.0.0
 jsonschema[format-nongpl]==4.23.0
 jsonschema-specifications==2023.12.1
-jupyter==1.0.0
-jupyter-client==8.6.2
+jupyter==1.1.1
+jupyter-client==8.6.3
 jupyter-console==6.6.3
 jupyter-core==5.7.2
 jupyter-events==0.10.0
 jupyter-lsp==2.2.5
 jupyter-server==2.14.2
 jupyter-server-terminals==0.5.3
-jupyterlab==4.2.3
+jupyterlab==4.2.5
 jupyterlab-pygments==0.3.0
 jupyterlab-server==2.27.3
-jupyterlab-widgets==3.0.11
-jupytext==1.16.3
-lakefs==0.7.0
-lakefs-sdk==1.29.0
-markdown==3.6
+jupyterlab-widgets==3.0.13
+jupytext==1.16.4
+lakefs==0.7.1
+lakefs-sdk==1.36.0
+markdown==3.7
 markdown-it-py==3.0.0
 markupsafe==2.1.5
 matplotlib-inline==0.1.7
-mdit-py-plugins==0.4.1
+mdit-py-plugins==0.4.2
 mdurl==0.1.2
 mergedeep==1.3.4
-mike==2.1.2
+mike==2.1.3
 mistune==3.0.2
-mkdocs==1.6.0
-mkdocs-autorefs==1.0.1
-mkdocs-callouts==1.13.2
+mkdocs==1.6.1
+mkdocs-autorefs==1.2.0
+mkdocs-callouts==1.14.0
 mkdocs-gen-files==0.5.0
 mkdocs-get-deps==0.2.0
-mkdocs-git-revision-date-localized-plugin==1.2.6
+mkdocs-git-revision-date-localized-plugin==1.2.9
 mkdocs-include-dir-to-nav==1.2.0
 mkdocs-literate-nav==0.6.1
-mkdocs-material==9.5.29
+mkdocs-material==9.5.39
 mkdocs-material-extensions==1.3.1
 mkdocs-section-index==0.3.9
-mkdocstrings[python]==0.25.1
-mkdocstrings-python==1.10.5
+mkdocstrings[python]==0.26.1
+mkdocstrings-python==1.11.1
 mknotebooks==0.8.0
 mypy-extensions==1.0.0
 nbclient==0.10.0
 nbconvert==7.16.4
 nbformat==5.10.4
-neoteroi-mkdocs==1.0.5
+neoteroi-mkdocs==1.1.0
 nest-asyncio==1.6.0
-notebook==7.2.1
+notebook==7.2.2
 notebook-shim==0.2.4
 overrides==7.7.0
 packaging==24.1
-paginate==0.5.6
+paginate==0.5.7
 pandocfilters==1.5.1
 parso==0.8.4
 pathspec==0.12.1
 pexpect==4.9.0
-platformdirs==4.2.2
-prometheus-client==0.20.0
-prompt-toolkit==3.0.47
+platformdirs==4.3.6
+prometheus-client==0.21.0
+prompt-toolkit==3.0.48
 psutil==6.0.0
 ptyprocess==0.7.0
-pure-eval==0.2.2
+pure-eval==0.2.3
 pycparser==2.22
-pydantic==2.8.2
-pydantic-core==2.20.1
+pydantic==2.9.2
+pydantic-core==2.23.4
 pygments==2.18.0
-pymdown-extensions==10.8.1
-pyparsing==3.1.2
+pymdown-extensions==10.11.1
+pyparsing==3.1.4
 python-dateutil==2.9.0.post0
 python-json-logger==2.0.7
-pytz==2024.1
-pyyaml==6.0.1
+pytz==2024.2
+pyyaml==6.0.2
 pyyaml-env-tag==0.1
-pyzmq==26.0.3
-qtconsole==5.5.2
-qtpy==2.4.1
+pyzmq==26.2.0
 referencing==0.35.1
-regex==2024.5.15
+regex==2024.9.11
 requests==2.32.3
 rfc3339-validator==0.1.4
 rfc3986-validator==0.1.1
-rich==13.7.1
-rpds-py==0.19.0
+rich==13.8.1
+rpds-py==0.20.0
 send2trash==1.8.3
-setuptools==70.3.0
+setuptools==75.1.0
 six==1.16.0
 smmap==5.0.1
 sniffio==1.3.1
-soupsieve==2.5
+soupsieve==2.6
 stack-data==0.6.3
 terminado==0.18.1
 tinycss2==1.3.0
+tomli==2.0.1
 tornado==6.4.1
 traitlets==5.14.3
-types-python-dateutil==2.9.0.20240316
+types-python-dateutil==2.9.0.20240906
 typing-extensions==4.12.2
 uri-template==1.3.0
 urllib3==2.0.7
 verspec==0.1.0
-watchdog==4.0.1
+watchdog==5.0.3
 wcwidth==0.2.13
-webcolors==24.6.0
+webcolors==24.8.0
 webencodings==0.5.1
 websocket-client==1.8.0
-widgetsnbextension==4.0.11
-zipp==3.19.2
+widgetsnbextension==4.0.13
+zipp==3.20.2