Create github action to run pre-commit and snakemake on repo #7
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| name: main | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| jobs: | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v3 | |
| - uses: pre-commit/[email protected] | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Snakemake | |
| uses: snakemake/[email protected] | |
| with: | |
| directory: '.test' | |
| snakefile: 'workflow/Snakefile' | |
| args: '--cores=1 --config=config/config.yaml --sdm=conda --conda-cleanup-pkgs=cache' |