Run in project directory to avoid path-management headaches

Another strategy would be to create a "test" folder with config and
input data, and run there. But then what is the point of the config/
directory?

.github/workflows/main.yml

@@ -18,6 +18,5 @@ jobs:
       - name: Snakemake
         uses: snakemake/[email protected]
         with:
-          directory: '.test'
-          snakefile: 'workflow/Snakefile'
-          args: '--cores=1 --config=config/config.yaml --sdm=conda --conda-cleanup-pkgs=cache'
+          directory: '.'
+          args: '--cores=1 --sdm=conda --conda-cleanup-pkgs=cache'