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2.0.1
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@bolosky bolosky released this 25 Feb 20:35
· 31 commits to master since this release
v2.0.1
5c2a38f

This includes two new features and a number of bugfixes.

The features are support for reading compressed FASTA files during index build, and no longer requiring read names to have /1 and /2 for paired interleaved FASTQ inputs.

The bug fixes are:
A problem with sorting SAM format output files
A problem with CIGAR string generation in SAM format output files when using the -= option
Fixed some misleading error messages
Added description of previously undocumented command line switches in the manual

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