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Merge pull request #3 from will-rowe/master
adding SARS-CoV-2 schemes and adding latest scheme format to all versions
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,26 @@ | ||
| dist: xenial | ||
| language: python # this works for Linux but is an error on macOS or Windows | ||
| jobs: | ||
| include: | ||
| - name: "Python 3.6 on Xenial Linux" | ||
| python: 3.6 # this works for Linux but is ignored on macOS or Windows | ||
| - name: "Python 3.6 on macOS" | ||
| os: osx | ||
| language: shell # 'language: python' is an error on Travis CI macOS | ||
| python: 3.6 | ||
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| install: | ||
| - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then MINICONDA_OS=Linux; else MINICONDA_OS=MacOSX; fi | ||
| - wget https://repo.anaconda.com/miniconda/Miniconda3-latest-$MINICONDA_OS-x86_64.sh -O miniconda.sh | ||
| - bash miniconda.sh -b -p "$HOME"/miniconda | ||
| - source "$HOME/miniconda/etc/profile.d/conda.sh" | ||
| - hash -r | ||
| - conda config --set always_yes yes --set changeps1 no | ||
| - conda update -q conda | ||
| - conda info -a | ||
| - conda create -y -n primerSchemes -c conda-forge -c bioconda artic-tools | ||
| - conda activate primerSchemes | ||
|
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||
| script: | ||
| # validate the schemes using artic-tools | ||
| for i in */V*/*.primer.bed; do artic-tools validate_scheme $i; done; |
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| MIT License | ||
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| Copyright (c) 2020 ARTIC Network | ||
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| Permission is hereby granted, free of charge, to any person obtaining a copy | ||
| of this software and associated documentation files (the "Software"), to deal | ||
| in the Software without restriction, including without limitation the rights | ||
| to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
| copies of the Software, and to permit persons to whom the Software is | ||
| furnished to do so, subject to the following conditions: | ||
|
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| The above copyright notice and this permission notice shall be included in all | ||
| copies or substantial portions of the Software. | ||
|
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| THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
| IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
| FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
| AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
| LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
| OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
| SOFTWARE. |
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