Sarah Segel: Merge pull request #105 from automl/feature/smac-multi-o…

…bjective
automl · Jan 25, 2024 · ab807a5 · ab807a5
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diff --git a/development/.buildinfo b/development/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 3fd7575e67d1586128d3ba0edec98df3
+config: e27100b7398878a478b65fca541e6eab
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/development/.doctrees/api.doctree b/development/.doctrees/api.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.doctree b/development/.doctrees/api/deepcave.evaluators.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.epm.doctree b/development/.doctrees/api/deepcave.evaluators.epm.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.epm.fanova_forest.doctree b/development/.doctrees/api/deepcave.evaluators.epm.fanova_forest.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.epm.random_forest.doctree b/development/.doctrees/api/deepcave.evaluators.epm.random_forest.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.epm.random_forest_surrogate.doctree b/development/.doctrees/api/deepcave.evaluators.epm.random_forest_surrogate.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.epm.utils.doctree b/development/.doctrees/api/deepcave.evaluators.epm.utils.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.fanova.doctree b/development/.doctrees/api/deepcave.evaluators.fanova.doctree
diff --git a/development/.doctrees/api/deepcave.evaluators.footprint.doctree b/development/.doctrees/api/deepcave.evaluators.footprint.doctree
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diff --git a/development/.doctrees/api/deepcave.utils.util.doctree b/development/.doctrees/api/deepcave.utils.util.doctree
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diff --git a/development/.doctrees/environment.pickle b/development/.doctrees/environment.pickle
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diff --git a/development/.doctrees/plugins/budget_correlation.doctree b/development/.doctrees/plugins/budget_correlation.doctree
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diff --git a/development/.doctrees/plugins/configurations.doctree b/development/.doctrees/plugins/configurations.doctree
diff --git a/development/.doctrees/plugins/cost_over_time.doctree b/development/.doctrees/plugins/cost_over_time.doctree
diff --git a/development/.doctrees/plugins/importances.doctree b/development/.doctrees/plugins/importances.doctree
diff --git a/development/.doctrees/plugins/index.doctree b/development/.doctrees/plugins/index.doctree
diff --git a/development/.doctrees/plugins/overview.doctree b/development/.doctrees/plugins/overview.doctree
diff --git a/development/.doctrees/plugins/parallel_coordinates.doctree b/development/.doctrees/plugins/parallel_coordinates.doctree
diff --git a/development/.doctrees/plugins/pareto_front.doctree b/development/.doctrees/plugins/pareto_front.doctree
diff --git a/development/.doctrees/plugins/partial_dependencies.doctree b/development/.doctrees/plugins/partial_dependencies.doctree
diff --git a/development/.doctrees/redis.doctree b/development/.doctrees/redis.doctree
diff --git a/development/.doctrees/sg_execution_times.doctree b/development/.doctrees/sg_execution_times.doctree
diff --git a/development/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip b/development/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip
diff --git a/development/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip b/development/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip
diff --git a/development/_modules/deepcave/runs/converters/smac3v2.html b/development/_modules/deepcave/runs/converters/smac3v2.html
@@ -735,10 +735,17 @@ <h1>Source code for deepcave.runs.converters.smac3v2</h1><div class="highlight">
             <span class="n">configspace</span> <span class="o">=</span> <span class="n">cs_json</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
 
         <span class="c1"># Read objectives</span>
-        <span class="c1"># We have to define it ourselves, because we don&#39;t know the type of the objective</span>
-        <span class="c1"># Only lock lower</span>
-        <span class="n">objective1</span> <span class="o">=</span> <span class="n">Objective</span><span class="p">(</span><span class="s2">&quot;Cost&quot;</span><span class="p">,</span> <span class="n">lower</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-        <span class="n">objective2</span> <span class="o">=</span> <span class="n">Objective</span><span class="p">(</span><span class="s2">&quot;Time&quot;</span><span class="p">,</span> <span class="n">lower</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+        <span class="k">with</span> <span class="p">(</span><span class="n">path</span> <span class="o">/</span> <span class="s2">&quot;scenario.json&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">open</span><span class="p">()</span> <span class="k">as</span> <span class="n">json_file</span><span class="p">:</span>
+            <span class="n">all_data</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">json_file</span><span class="p">)</span>
+            <span class="n">objectives</span> <span class="o">=</span> <span class="n">all_data</span><span class="p">[</span><span class="s2">&quot;objectives&quot;</span><span class="p">]</span>
+
+        <span class="n">obj_list</span> <span class="o">=</span> <span class="nb">list</span><span class="p">()</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">objectives</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+            <span class="n">objectives</span> <span class="o">=</span> <span class="p">[</span><span class="n">objectives</span><span class="p">]</span>
+        <span class="k">for</span> <span class="n">obj</span> <span class="ow">in</span> <span class="n">objectives</span><span class="p">:</span>
+            <span class="n">obj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Objective</span><span class="p">(</span><span class="n">obj</span><span class="p">))</span>
+        <span class="c1"># Only lock lower for time</span>
+        <span class="n">obj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Objective</span><span class="p">(</span><span class="s2">&quot;Time&quot;</span><span class="p">))</span>
 
         <span class="c1"># Read meta</span>
         <span class="k">with</span> <span class="p">(</span><span class="n">path</span> <span class="o">/</span> <span class="s2">&quot;scenario.json&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">open</span><span class="p">()</span> <span class="k">as</span> <span class="n">json_file</span><span class="p">:</span>
@@ -747,7 +754,7 @@ <h1>Source code for deepcave.runs.converters.smac3v2</h1><div class="highlight">
 
         <span class="c1"># Let&#39;s create a new run object</span>
         <span class="n">run</span> <span class="o">=</span> <span class="n">SMAC3v2Run</span><span class="p">(</span>
-            <span class="n">name</span><span class="o">=</span><span class="n">path</span><span class="o">.</span><span class="n">stem</span><span class="p">,</span> <span class="n">configspace</span><span class="o">=</span><span class="n">configspace</span><span class="p">,</span> <span class="n">objectives</span><span class="o">=</span><span class="p">[</span><span class="n">objective1</span><span class="p">,</span> <span class="n">objective2</span><span class="p">],</span> <span class="n">meta</span><span class="o">=</span><span class="n">meta</span>
+            <span class="n">name</span><span class="o">=</span><span class="n">path</span><span class="o">.</span><span class="n">stem</span><span class="p">,</span> <span class="n">configspace</span><span class="o">=</span><span class="n">configspace</span><span class="p">,</span> <span class="n">objectives</span><span class="o">=</span><span class="n">obj_list</span><span class="p">,</span> <span class="n">meta</span><span class="o">=</span><span class="n">meta</span>
         <span class="p">)</span>
 
         <span class="c1"># We have to set the path manually</span>
@@ -811,7 +818,7 @@ <h1>Source code for deepcave.runs.converters.smac3v2</h1><div class="highlight">
 
             <span class="k">if</span> <span class="n">status</span> <span class="o">!=</span> <span class="n">Status</span><span class="o">.</span><span class="n">SUCCESS</span><span class="p">:</span>
                 <span class="c1"># We don&#39;t want cost included which are failed</span>
-                <span class="n">cost</span> <span class="o">=</span> <span class="kc">None</span>
+                <span class="n">cost</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">cost</span><span class="p">)</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">cost</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="kc">None</span>
                 <span class="n">time</span> <span class="o">=</span> <span class="kc">None</span>
             <span class="k">else</span><span class="p">:</span>
                 <span class="n">time</span> <span class="o">=</span> <span class="n">endtime</span> <span class="o">-</span> <span class="n">starttime</span>
@@ -827,7 +834,7 @@ <h1>Source code for deepcave.runs.converters.smac3v2</h1><div class="highlight">
                 <span class="n">origin</span> <span class="o">=</span> <span class="n">config_origins</span><span class="p">[</span><span class="n">config_id</span><span class="p">]</span>
 
             <span class="n">run</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
-                <span class="n">costs</span><span class="o">=</span><span class="p">[</span><span class="n">cost</span><span class="p">,</span> <span class="n">time</span><span class="p">],</span>
+                <span class="n">costs</span><span class="o">=</span><span class="n">cost</span> <span class="o">+</span> <span class="p">[</span><span class="n">time</span><span class="p">]</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">cost</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="p">[</span><span class="n">cost</span><span class="p">,</span> <span class="n">time</span><span class="p">],</span>
                 <span class="n">config</span><span class="o">=</span><span class="n">config</span><span class="p">,</span>
                 <span class="n">budget</span><span class="o">=</span><span class="n">budget</span><span class="p">,</span>
                 <span class="n">start_time</span><span class="o">=</span><span class="n">starttime</span><span class="p">,</span>

diff --git a/development/api.html b/development/api.html
@@ -3,7 +3,7 @@
 <html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
     <title>API References &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.epm.fanova_forest.html b/development/api/deepcave.evaluators.epm.fanova_forest.html
@@ -3,7 +3,7 @@
 <html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
     <title>deepcave.evaluators.epm.fanova_forest &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.epm.html b/development/api/deepcave.evaluators.epm.html
@@ -3,7 +3,7 @@
 <html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
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     <title>deepcave.evaluators.epm &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.epm.random_forest.html b/development/api/deepcave.evaluators.epm.random_forest.html
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     <title>deepcave.evaluators.epm.random_forest &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.epm.random_forest_surrogate.html b/development/api/deepcave.evaluators.epm.random_forest_surrogate.html
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     <title>deepcave.evaluators.epm.random_forest_surrogate &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.epm.utils.html b/development/api/deepcave.evaluators.epm.utils.html
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     <title>deepcave.evaluators.epm.utils &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.fanova.html b/development/api/deepcave.evaluators.fanova.html
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     <title>deepcave.evaluators.fanova &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.footprint.html b/development/api/deepcave.evaluators.footprint.html
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     <title>deepcave.evaluators.footprint &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.html b/development/api/deepcave.evaluators.html
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     <title>deepcave.evaluators &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.evaluators.lpi.html b/development/api/deepcave.evaluators.lpi.html
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     <title>deepcave.evaluators.lpi &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.layouts.html b/development/api/deepcave.layouts.html
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     <title>deepcave.layouts &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.layouts.not_found.html b/development/api/deepcave.layouts.not_found.html
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diff --git a/development/api/deepcave.layouts.sidebar.html b/development/api/deepcave.layouts.sidebar.html
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     <title>deepcave.layouts.sidebar &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.budget.html b/development/api/deepcave.plugins.budget.html
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     <title>deepcave.plugins.budget &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.dynamic.html b/development/api/deepcave.plugins.dynamic.html
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     <title>deepcave.plugins.dynamic &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.html b/development/api/deepcave.plugins.html
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     <title>deepcave.plugins &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.hyperparameter.html b/development/api/deepcave.plugins.hyperparameter.html
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     <title>deepcave.plugins.hyperparameter &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.hyperparameter.importances.html b/development/api/deepcave.plugins.hyperparameter.importances.html
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     <title>deepcave.plugins.hyperparameter.importances &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.hyperparameter.pdp.html b/development/api/deepcave.plugins.hyperparameter.pdp.html
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     <title>deepcave.plugins.hyperparameter.pdp &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.objective.configuration_cube.html b/development/api/deepcave.plugins.objective.configuration_cube.html
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
     <title>deepcave.plugins.objective.configuration_cube &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.objective.cost_over_time.html b/development/api/deepcave.plugins.objective.cost_over_time.html
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     <title>deepcave.plugins.objective.cost_over_time &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.objective.html b/development/api/deepcave.plugins.objective.html
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
     <title>deepcave.plugins.objective &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 

diff --git a/development/api/deepcave.plugins.objective.parallel_coordinates.html b/development/api/deepcave.plugins.objective.parallel_coordinates.html
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     <title>deepcave.plugins.objective.parallel_coordinates &#8212; DeepCAVE Documentation 1.1.3 documentation</title>