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add AllTheBacteria dataset #2460

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mbhall88
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@mbhall88 mbhall88 commented Dec 9, 2024

Issue #, if available:

Two of the tags are reliant on the merging of #2457 (hence the failing CI)

Description of changes:

I haven't included ARNs etc. as we obviously need to have our AWS account linked before we upload the data and therefore get the ARNs.

Similar with the tutorials, we will add some simple access tutorials once we have ARNs. We are also working with some folks at AWS to build a larger more involved tutorial using the large LexicMap search index for running queries against the dataset on AWS.

By submitting this pull request, I confirm that you can use, modify, copy, and redistribute this contribution, under the terms of your choice.

@mbhall88 mbhall88 marked this pull request as draft December 9, 2024 23:43
@johnlees
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@mbhall88 some info to help complete this

ARNs:

  • arn:aws:s3:::allthebacteria-assemblies
  • arn:aws:s3:::allthebacteria-phylogeneticbatches
  • arn:aws:s3:::allthebacteria-metadata
  • arn:aws:s3:::allthebacteria-lexicmap

Regions for all are eu-west-2

@mbhall88
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Awesome. Thanks @johnlees. All updated

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2 participants