Merge pull request #369 from poissonconsulting/main

update vignettes

CONTRIBUTING.Rmd

@@ -18,17 +18,17 @@ All contributors retain the original copyright to their stuff, but by contributi
 
 **New code file:** At the top of the file, please ensure copyright and year is attributed to collaborator and assign the Apache 2.0 license
 
-**Major addition to code file:** “Copyright YYYY Province of British Columbia” and Apache 2.0 remains as a header and either the second collaborator is added if there are changes throughout the code or copyright is listed for specific lines of code.  So it could read:
+**Major addition to code file:** “Copyright 2018-2024 Province of British Columbia” and Apache 2.0 remains as a header and either the second collaborator is added if there are changes throughout the code or copyright is listed for specific lines of code.  So it could read:
 
-Copyright 2020-2022 Province of British Columbia
+Copyright 2018-2024 Province of British Columbia
 Copyright 2024 Collaborator
 Apache 2.0 License
 
 Or 
 
-Copyright 2020-2022 Province of British Columbia
+Copyright 2018-2024 Province of British Columbia
 Copyright 2024 Collaborator Lines 200-500
 Apache 2.0 License
 
-**Minor changes:**  If there are small changes to the code throughout the file then it may be easiest to keep these files as Copyright YYYY Province of British Columbia.  
+**Minor changes:**  If there are small changes to the code throughout the file then it may be easiest to keep these files as Copyright 2018-2024 Province of British Columbia.  
 However, the contribution will be tracked through GitHub.

R/licensing.R

@@ -7,11 +7,9 @@
 #' licensing_md()
 licensing_md <- function() {
 "## Licensing
-  
-  Copyright 2024 Province of British Columbia,
-   Environment and Climate Change Canada, and 
-   Australian Government Department of 
-   Climate Change, Energy, the Environment and Water
+  Copyright 2018-2024 Province of British Columbia\\
+  Copyright 2021 Environment and Climate Change Canada\\
+  Copyright 2023-2024 Australian Government Department of Climate Change, Energy, the Environment and Water
   
   The documentation is released under the
   [CC BY 4.0 License](https://creativecommons.org/licenses/by/4.0/)

_pkgdown.yml

@@ -119,3 +119,4 @@ articles:
   - articles/confidence-intervals
   - embelishing-plots
   - additional-technical-details
+  - faqs

paper/paper.bib

@@ -122,14 +122,16 @@ @article{thorley2018ssdtools
   volume={3},
   number={31},
   pages={1082},
-  year={2018}
+  year={2018},
+  url = {https://joss.theoj.org/papers/10.21105/joss.01082}
 }  
 
 @article{barry2012burrlioz,
   title={Burrlioz 2.0 Manual},
   author={Barry, S and Henderson, B},
-  journal={Commonwealth Science and Industrical Research Organisation.[cited 2017 September 14]. Availab le from: https://research. csiro. au/software/burrlioz},
-  year={2012}
+  journal={Commonwealth Science and Industrical Research Organisation},
+  year={2012},
+  url={https://research.csiro.au/software/burrlioz}
 }
 
 @article{fox_recent_2021,
@@ -180,6 +182,7 @@ @techreport{Warne2018
    title = {{Revised Method for Deriving Australian and New Zealand Water Quality Guideline Values for Toxicants} – update of 2015 version.},
    year = {2018},
    publisher = {{Prepared for the Revision of the Australian and New Zealand Guidelines for Fresh and Marine Water Quality. Australian and New Zealand Governments and Australian state and territory governments, Canberra}, 48 pp},
+   url = {https://www.waterquality.gov.au/sites/default/files/documents/warne-wqg-derivation2018.pdf}
 }
 
 @article{lepper2005manual,
@@ -188,14 +191,16 @@ @article{lepper2005manual
   journal={Schmallenberg, Germany: Fraunhofer-Institute Molecular Biology and Applied Ecology},
   volume={15},
   pages={51--52},
-  year={2005}
+  year={2005},
+  url = {https://www.helpdeskwater.nl/publish/pages/131519/_16__manual_on_the_methodological_framework_to_derive_environmental_quality_standards_for_priori.pdf}
 }
 
 @techreport{bcmecc2019,
    author = {{BC Ministry of Environment and Climate Change Strategy}},
    title = {{Derivation of Water Quality Guidelines for the Protection of Aquatic Life in British Columbia}. Water Quality Guideline Series, WQG‐06},
    year = {2019},
    publisher = {Province of British Columbia, Victoria, BC, Canada},
+   url = {https://www2.gov.bc.ca/assets/gov/environment/air-land-water/water/waterquality/water-quality-guidelines/derivation-protocol/bc_wqg_aquatic_life_derivation_protocol.pdf&ved=2ahUKEwip7IfF_PCFAxUxqlYBHY0YBNMQFnoECBUQAQ&usg=AOvVaw16moKPwHywW1cutwlQaMoK}
 }
 
 @techreport{USEPA2020,