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Add statement about use of animal data
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benlansdell committed Nov 23, 2023
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Expand Up @@ -63,7 +63,7 @@ will compute all distances between all body parts (both between and within anima
We can load pose data from DLC, and behavior annotation data from BORIS, provided we also provide a little metadata for context. E.g.:
```python
pose_files, behavior_files = get_sample_data_paths_dlcboris()
metadata = create_metadata(pose_file, labels = behavior_files, fps = 30)
metadata = create_metadata(pose_files, labels = behavior_files, fps = 30)
dataset = create_dataset(metadata)
```

Expand Down Expand Up @@ -136,4 +136,11 @@ SLEAP is an open source deep-learning based framework for multi-animal pose trac

## Contributing

Refer to `CONTRIBUTING.md` for guidelines on how to contribute to the project, and report bugs, etc.
Refer to `CONTRIBUTING.md` for guidelines on how to contribute to the project, and report bugs, etc.

## Animal data

Sample data was obtained from resident-intruder open field recordings performed as part of on going social memory studies performed in the Zakharenko lab at St Jude Children's Research Hospital (e.g. [1,2]). All animal experiments were reviewed and approved by the Institutional Animal Care & Use Committee of St. Jude Children’s Research Hospital.

[1] "SCHIZOPHRENIA-RELATED MICRODELETION GENE 2510002D24Rik IS ESSENTIAL FOR SOCIAL MEMORY" US Patent US20220288235A1. Stanislav S. Zakharenko, Prakash DEVARAJU https://patents.google.com/patent/US20220288235A1/en
[2] "A murine model of hnRNPH2-related neurodevelopmental disorder reveals a mechanism for genetic compensation by Hnrnph1". Korff et al. Journal of clinical investigation 133(14). 2023.

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