Update ascets_resources.R

Fixed an issue where the incorrect command line input was used to set the BOC parameter
beroukhim-lab · Oct 24, 2023 · 8aadea8 · 8aadea8
1 parent 87f844f
commit 8aadea8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ascets_resources.R b/ascets_resources.R
@@ -51,7 +51,7 @@ handle_command_args <- function(args) {
 
   # load the remaining required files and parameters
   cytoband <<- as.data.frame(fread(arg_df$value[arg_df$flag == "-c"]))
-  min_boc <<- ifelse(length(arg_df$value[arg_df$flag == "-t"]) > 0, as.numeric(arg_df$value[arg_df$flag == "-t"]), 0.5)
+  min_boc <<- ifelse(length(arg_df$value[arg_df$flag == "-m"]) > 0, as.numeric(arg_df$value[arg_df$flag == "-m"]), 0.5)
   name <<- arg_df$value[arg_df$flag == "-o"]
 
   # check if optional noise file has been supplied