[DATALAD RUNCMD] fix bids uri

=== Do not change lines below === { "chain": [], "cmd": "python tools/update_intended_for.py", "exit": 0, "extra_inputs": [], "inputs": [], "outputs": [], "pwd": "." } ^^^ Do not change lines above ^^^
bids-standard · Sep 2, 2023 · c7673e5 · c7673e5
1 parent 1de9f6c
commit c7673e5
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Showing 84 changed files with 2,455 additions and 2,159 deletions.
diff --git a/asl002/sub-Sub103/perf/sub-Sub103_m0scan.json b/asl002/sub-Sub103/perf/sub-Sub103_m0scan.json
@@ -1,19 +1,42 @@
-{"Manufacturer":"Philips",
-"ManufacturersModelName":"Achieva",
-"SoftwareVersions":"5.1.7_5.1.7.2",
-"MagneticFieldStrength":3,
-"ReceiveCoilName":"MULTI_COIL",
-"MRAcquisitionType":"2D",
-"PulseSequenceType":"EPI",
-"ScanningSequence":"GR",
-"SequenceVariant":"SK",
-"ScanOptions":"FS",
-"PulseSequenceDetails":"Philips 2D epi pcasl product",
-"PartialFourier":0.421875,
-"PhaseEncodingDirection":"j",
-"TotalReadoutTime":0.02198740305218437,
-"EchoTime":0.015001,
-"SliceTiming":[0,0.0385,0.077,0.1155,0.154,0.1925,0.231,0.2695,0.308,0.3465,0.385,0.4235,0.462,0.5004999999999999,0.539,0.5775,0.616,0.6545,0.6929999999999999,0.7315],
-"FlipAngle":90,
-"RepetitionTimePreparation":9,
-"IntendedFor":"perf/sub-Sub103_asl.nii.gz"}
+{
+ "Manufacturer": "Philips",
+ "ManufacturersModelName": "Achieva",
+ "SoftwareVersions": "5.1.7_5.1.7.2",
+ "MagneticFieldStrength": 3,
+ "ReceiveCoilName": "MULTI_COIL",
+ "MRAcquisitionType": "2D",
+ "PulseSequenceType": "EPI",
+ "ScanningSequence": "GR",
+ "SequenceVariant": "SK",
+ "ScanOptions": "FS",
+ "PulseSequenceDetails": "Philips 2D epi pcasl product",
+ "PartialFourier": 0.421875,
+ "PhaseEncodingDirection": "j",
+ "TotalReadoutTime": 0.02198740305218437,
+ "EchoTime": 0.015001,
+ "SliceTiming": [
+  0,
+  0.0385,
+  0.077,
+  0.1155,
+  0.154,
+  0.1925,
+  0.231,
+  0.2695,
+  0.308,
+  0.3465,
+  0.385,
+  0.4235,
+  0.462,
+  0.5005,
+  0.539,
+  0.5775,
+  0.616,
+  0.6545,
+  0.693,
+  0.7315
+ ],
+ "FlipAngle": 90,
+ "RepetitionTimePreparation": 9,
+ "IntendedFor": "bids::sub-Sub103/perf/sub-Sub103_asl.nii.gz"
+}
diff --git a/asl003/sub-Sub1/perf/sub-Sub1_m0scan.json b/asl003/sub-Sub1/perf/sub-Sub1_m0scan.json
@@ -1,23 +1,29 @@
-{"Manufacturer":"Siemens",
-"ManufacturersModelName":"TrioTim",
-"SoftwareVersions":"N4_VB17A_LATEST_20090307",
-"MagneticFieldStrength":3,
-"ReceiveCoilName":"32Ch_Head",
-"ReceiveCoilActiveElements":"C:HEA;HEP",
-"MRAcquisitionType":"3D",
-"PulseSequenceType":"3Dgrase",
-"ScanningSequence":"RM",
-"SequenceVariant":"SK",
-"ScanOptions":"SAT1_FS",
-"SequenceName":"grs3d3d1_1152t0",
-"PulseSequenceDetails":"Bremen sequence: fme_ASL_Collection_002A",
-"PartialFourier":1,
-"PhaseEncodingDirection":"j-",
-"EffectiveEchoSpacing":0.00052,
-"TotalReadoutTime":0.0104,
-"EchoTime":0.01614,
-"DwellTime":3.4e-06,
-"FlipAngle":180,
-"RepetitionTimePreparation":6,
-"IntendedFor":"perf/sub-Sub1_asl.nii.gz",
-"AcquisitionVoxelsize":[2,2,5]}
+{
+ "Manufacturer": "Siemens",
+ "ManufacturersModelName": "TrioTim",
+ "SoftwareVersions": "N4_VB17A_LATEST_20090307",
+ "MagneticFieldStrength": 3,
+ "ReceiveCoilName": "32Ch_Head",
+ "ReceiveCoilActiveElements": "C:HEA;HEP",
+ "MRAcquisitionType": "3D",
+ "PulseSequenceType": "3Dgrase",
+ "ScanningSequence": "RM",
+ "SequenceVariant": "SK",
+ "ScanOptions": "SAT1_FS",
+ "SequenceName": "grs3d3d1_1152t0",
+ "PulseSequenceDetails": "Bremen sequence: fme_ASL_Collection_002A",
+ "PartialFourier": 1,
+ "PhaseEncodingDirection": "j-",
+ "EffectiveEchoSpacing": 0.00052,
+ "TotalReadoutTime": 0.0104,
+ "EchoTime": 0.01614,
+ "DwellTime": 3.4e-06,
+ "FlipAngle": 180,
+ "RepetitionTimePreparation": 6,
+ "IntendedFor": "bids::sub-Sub1/perf/sub-Sub1_asl.nii.gz",
+ "AcquisitionVoxelsize": [
+  2,
+  2,
+  5
+ ]
+}
diff --git a/asl004/sub-Sub1/fmap/sub-Sub1_dir-pa_m0scan.json b/asl004/sub-Sub1/fmap/sub-Sub1_dir-pa_m0scan.json
@@ -1,12 +1,39 @@
-{"Manufacturer":"Siemens",
-"ManufacturersModelName":"TrioTim",
-"MagneticFieldStrength":3,
-"MRAcquisitionType":"2D",
-"PulseSequenceType":"EPI",
-"PhaseEncodingDirection":"j",
-"TotalReadoutTime":0.06,
-"EchoTime":0.014,
-"SliceTiming":[0,0.0452,0.0904,0.1356,0.1808,0.226,0.2712,0.3164,0.3616,0.4068,0.452,0.4972,0.5424,0.5876,0.6328,0.678,0.7232,0.7684,0.8136,0.8588,0.904,0.9492,0.9944,1.0396],
-"FlipAngle":90,
-"RepetitionTimePreparation":4.8,
-"IntendedFor":"perf/sub-Sub1_m0scan.nii.gz"}
+{
+ "Manufacturer": "Siemens",
+ "ManufacturersModelName": "TrioTim",
+ "MagneticFieldStrength": 3,
+ "MRAcquisitionType": "2D",
+ "PulseSequenceType": "EPI",
+ "PhaseEncodingDirection": "j",
+ "TotalReadoutTime": 0.06,
+ "EchoTime": 0.014,
+ "SliceTiming": [
+  0,
+  0.0452,
+  0.0904,
+  0.1356,
+  0.1808,
+  0.226,
+  0.2712,
+  0.3164,
+  0.3616,
+  0.4068,
+  0.452,
+  0.4972,
+  0.5424,
+  0.5876,
+  0.6328,
+  0.678,
+  0.7232,
+  0.7684,
+  0.8136,
+  0.8588,
+  0.904,
+  0.9492,
+  0.9944,
+  1.0396
+ ],
+ "FlipAngle": 90,
+ "RepetitionTimePreparation": 4.8,
+ "IntendedFor": "bids::sub-Sub1/perf/sub-Sub1_m0scan.nii.gz"
+}
diff --git a/asl004/sub-Sub1/perf/sub-Sub1_m0scan.json b/asl004/sub-Sub1/perf/sub-Sub1_m0scan.json
@@ -1,12 +1,39 @@
-{"Manufacturer":"Siemens",
-"ManufacturersModelName":"TrioTim",
-"MagneticFieldStrength":3,
-"MRAcquisitionType":"2D",
-"PulseSequenceType":"EPI",
-"PhaseEncodingDirection":"j-",
-"TotalReadoutTime":0.06,
-"EchoTime":0.014,
-"SliceTiming":[0,0.0452,0.0904,0.1356,0.1808,0.226,0.2712,0.3164,0.3616,0.4068,0.452,0.4972,0.5424,0.5876,0.6328,0.678,0.7232,0.7684,0.8136,0.8588,0.904,0.9492,0.9944,1.0396],
-"FlipAngle":90,
-"RepetitionTimePreparation":4.8,
-"IntendedFor":"perf/sub-Sub1_asl.nii.gz"}
+{
+ "Manufacturer": "Siemens",
+ "ManufacturersModelName": "TrioTim",
+ "MagneticFieldStrength": 3,
+ "MRAcquisitionType": "2D",
+ "PulseSequenceType": "EPI",
+ "PhaseEncodingDirection": "j-",
+ "TotalReadoutTime": 0.06,
+ "EchoTime": 0.014,
+ "SliceTiming": [
+  0,
+  0.0452,
+  0.0904,
+  0.1356,
+  0.1808,
+  0.226,
+  0.2712,
+  0.3164,
+  0.3616,
+  0.4068,
+  0.452,
+  0.4972,
+  0.5424,
+  0.5876,
+  0.6328,
+  0.678,
+  0.7232,
+  0.7684,
+  0.8136,
+  0.8588,
+  0.904,
+  0.9492,
+  0.9944,
+  1.0396
+ ],
+ "FlipAngle": 90,
+ "RepetitionTimePreparation": 4.8,
+ "IntendedFor": "bids::sub-Sub1/perf/sub-Sub1_asl.nii.gz"
+}
diff --git a/asl005/sub-Sub103/perf/sub-Sub103_m0scan.json b/asl005/sub-Sub103/perf/sub-Sub103_m0scan.json
@@ -1,19 +1,21 @@
-{"Manufacturer":"Siemens",
-"ManufacturersModelName":"Prisma_fit",
-"SoftwareVersions":"syngo_MR_E11",
-"MagneticFieldStrength":3,
-"ReceiveCoilName":"HeadNeck_64",
-"ReceiveCoilActiveElements":"HC1-6",
-"MRAcquisitionType":"3D",
-"PulseSequenceType":"3Dgrase",
-"ScanningSequence":"EP",
-"SequenceVariant":"SK",
-"ScanOptions":"SAT1_FS",
-"SequenceName":"tg818I3d1_6720",
-"PulseSequenceDetails":"Siemens 3D GRASE product sequence (WIP): tgse_csl_818",
-"PartialFourier":1,
-"EchoTime":0.01328,
-"DwellTime":3.2e-06,
-"FlipAngle":130,
-"RepetitionTimePreparation":4.95,
-"IntendedFor":"perf/sub-Sub103_asl.nii.gz"}
+{
+ "Manufacturer": "Siemens",
+ "ManufacturersModelName": "Prisma_fit",
+ "SoftwareVersions": "syngo_MR_E11",
+ "MagneticFieldStrength": 3,
+ "ReceiveCoilName": "HeadNeck_64",
+ "ReceiveCoilActiveElements": "HC1-6",
+ "MRAcquisitionType": "3D",
+ "PulseSequenceType": "3Dgrase",
+ "ScanningSequence": "EP",
+ "SequenceVariant": "SK",
+ "ScanOptions": "SAT1_FS",
+ "SequenceName": "tg818I3d1_6720",
+ "PulseSequenceDetails": "Siemens 3D GRASE product sequence (WIP): tgse_csl_818",
+ "PartialFourier": 1,
+ "EchoTime": 0.01328,
+ "DwellTime": 3.2e-06,
+ "FlipAngle": 130,
+ "RepetitionTimePreparation": 4.95,
+ "IntendedFor": "bids::sub-Sub103/perf/sub-Sub103_asl.nii.gz"
+}
diff --git a/ds000117/sub-01/ses-mri/fmap/sub-01_ses-mri_phasediff.json b/ds000117/sub-01/ses-mri/fmap/sub-01_ses-mri_phasediff.json
@@ -1,17 +1,17 @@
-{
- "RepetitionTime": 0.4,
- "EchoTime1": 0.00519,
- "EchoTime2": 0.00765,
- "FlipAngle": 60,
- "IntendedFor": [
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz",
-  "ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz"
- ]
-}
+{
+ "RepetitionTime": 0.4,
+ "EchoTime1": 0.00519,
+ "EchoTime2": 0.00765,
+ "FlipAngle": 60,
+ "IntendedFor": [
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz",
+  "bids::sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz"
+ ]
+}
diff --git a/ds000117/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.json b/ds000117/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.json
@@ -1,17 +1,17 @@
-{
- "RepetitionTime": 0.4,
- "EchoTime1": 0.00519,
- "EchoTime2": 0.00765,
- "FlipAngle": 60,
- "IntendedFor": [
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-02_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-03_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-04_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-05_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-06_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-07_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-08_bold.nii.gz",
-  "ses-mri/func/sub-02_ses-mri_task-facerecognition_run-09_bold.nii.gz"
- ]
-}
+{
+ "RepetitionTime": 0.4,
+ "EchoTime1": 0.00519,
+ "EchoTime2": 0.00765,
+ "FlipAngle": 60,
+ "IntendedFor": [
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-02_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-03_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-04_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-05_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-06_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-07_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-08_bold.nii.gz",
+  "bids::sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-09_bold.nii.gz"
+ ]
+}
diff --git a/ds000117/sub-03/ses-mri/fmap/sub-03_ses-mri_phasediff.json b/ds000117/sub-03/ses-mri/fmap/sub-03_ses-mri_phasediff.json
@@ -1,17 +1,17 @@
-{
- "RepetitionTime": 0.4,
- "EchoTime1": 0.00519,
- "EchoTime2": 0.00765,
- "FlipAngle": 60,
- "IntendedFor": [
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-01_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-02_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-03_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-04_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-05_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-06_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-07_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-08_bold.nii.gz",
-  "ses-mri/func/sub-03_ses-mri_task-facerecognition_run-09_bold.nii.gz"
- ]
-}
+{
+ "RepetitionTime": 0.4,
+ "EchoTime1": 0.00519,
+ "EchoTime2": 0.00765,
+ "FlipAngle": 60,
+ "IntendedFor": [
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-01_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-02_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-03_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-04_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-05_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-06_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-07_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-08_bold.nii.gz",
+  "bids::sub-03/ses-mri/func/sub-03_ses-mri_task-facerecognition_run-09_bold.nii.gz"
+ ]
+}