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Bump nf core #52779

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merged 7 commits into from
Jan 10, 2025
Merged

Bump nf core #52779

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8a712cc
update nf-core dependencies
mirpedrol Dec 13, 2024
b3c0397
obtain nf-core package from GitHub
mirpedrol Dec 13, 2024
525bd31
Update nf-core to 3.1.0
mirpedrol Dec 13, 2024
e5760a7
Merge branch 'master' into bump-nf-core
matthdsm Dec 15, 2024
3165f30
Merge branch 'master' into bump-nf-core
mirpedrol Jan 10, 2025
e60a5ff
correct sha
mirpedrol Jan 10, 2025
6bb6ba9
update prompt_toolkit version
mirpedrol Jan 10, 2025
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12 changes: 7 additions & 5 deletions recipes/nf-core/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,18 +1,18 @@
{% set name = "nf-core" %}
{% set version = "3.0.2" %}
{% set sha256 = "d4cd7336ffc8ee4345de3773a5c7b162d8b552fb36cb73823b1aef2fc1420f91" %}
{% set version = "3.1.0" %}
{% set sha256 = "e059ab394a7a26d3dafb380c57157f14e2882cce035506276e19e8458355b2cf" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/nf_core-{{ version }}.tar.gz
url: https://github.com/nf-core/tools/archive/refs/tags/{{ version }}.tar.gz
sha256: '{{ sha256 }}'

build:
noarch: python
number: 1
number: 0
script: "touch requirements.txt && {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
entry_points:
- nf-core=nf_core.__main__:run_nf_core
Expand All @@ -38,7 +38,7 @@ requirements:
- pillow
#- pdiff
- pre-commit
- prompt_toolkit >=3.0.36
- prompt_toolkit >=3.0.48
- pydantic >=2.2.1
- pyyaml
- questionary >=2.0.1
Expand All @@ -47,6 +47,8 @@ requirements:
- requests-cache
- rich >=13.3.1
- rich-click ==1.8.*
- rocrate
- repo2rocrate
- ruamel.yaml
- tabulate
- textual ==0.71.0
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