Merge pull request #200 from ElDeveloper/release_0.9.1

Release 0.9.1

ChangeLog.md

@@ -1,5 +1,5 @@
-Emperor 0.9.1 (changes since Emperor 0.9.0 go here)
-===================================================
+Emperor 0.9.1
+=============
 
 *New features*
 
@@ -22,6 +22,8 @@ Emperor 0.9.1 (changes since Emperor 0.9.0 go here)
 * Add color pickers for connecting bars in coordinate comparison plots.
 * Add option to select a master set of coordinates when making a comparison plot.
 * Adds a feature to negate axes. With this feature you can negate the coordinates of each data point. As a result, the spheres and/or edges will be adjusted appropriately. 
+* Minor additions to the separator controller for the side bar.
+* As of 308629f550ff3e108903d3bcf1ce76ce85f4cb96 Emperor is now released under a BSD license.
 
 
 *Bug Fixes*
@@ -33,6 +35,10 @@ Emperor 0.9.1 (changes since Emperor 0.9.0 go here)
 * Comparison bars checkbox now accurately reflects status of the visiblity rather than opposite.
 * Scaling by percent explained now works with vectors and coordinate comparison plots.
 * Fixed bug where only the first bars in coordinate comparison plots could be hidden.
+* Improved documentation for saving and exporting images.
+* Emperor now fails graciously when WebGL is not enabled and gives you a few suggestions on how to get it to work.
+
+
 
 Emperor 0.9.0 (14 May 2013)
 ===========================

emperor/__init__.py

@@ -5,9 +5,9 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Antonio Gonzalez Pena", "Meg Pirrung", "Yoshiki Vazquez Baeza"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Antonio Gonzalez Pena"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 __all__ = ['biplots', 'format', 'filter', 'sort', 'util']

emperor/biplots.py

@@ -6,10 +6,10 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 from numpy import argsort, array
 

emperor/filter.py

@@ -6,10 +6,10 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 from numpy import array
 

emperor/format.py

@@ -6,10 +6,10 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Meg Pirrung", "Antonio Gonzalez Pena", "Yoshiki Vazquez Baeza"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 
 from sys import argv

emperor/sort.py

@@ -6,10 +6,10 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 from numpy import zeros
 from re import compile, search

emperor/support_files/emperor/js/emperor.js

@@ -3,10 +3,10 @@
  * __copyright__ = "Copyright 2013, Emperor"
  * __credits__ = ["Meg Pirrung","Antonio Gonzalez Pena","Yoshiki Vazquez Baeza","Jackson Chen"]
  * __license__ = "BSD"
- * __version__ = "0.9.0-dev"
+ * __version__ = "0.9.1"
  * __maintainer__ = "Meg Pirrung"
  * __email__ = "[email protected]"
- * __status__ = "Development"
+ * __status__ = "Release"
  */
 
 // spheres and ellipses that are being displayed on screen

emperor/util.py

@@ -6,10 +6,10 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza", "Antonio Gonzalez Pena"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 
 from numpy import ndarray, array, ones, zeros, vstack

scripts/make_emperor.py

@@ -6,10 +6,10 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Antonio Gonzalez Pena", "Yoshiki Vazquez Baeza"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 from os import listdir
 from os.path import join, exists, isdir, abspath

setup.py

@@ -7,10 +7,10 @@
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Antonio Gonzalez Pena", "Meg Pirrung", "Yoshiki Vazquez Baeza"]
 __license__ = "BSD"
-__version__ = "0.9.0-dev"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 # without any of these emperor will not function correctly
 required_python_modules = ['numpy', 'cogent', 'qiime']

tests/all_tests.py

@@ -20,11 +20,11 @@
 __copyright__ = "Copyright 2013, The Emperor Project" #consider project name
 __credits__ = ["Rob Knight","Greg Caporaso", "Jai Ram Rideout",
     "Yoshiki Vazquez-Baeza"] #remember to add yourself if you make changes
-__license__ = "GPL"
-__version__ = "0.9.0-dev"
+__license__ = "BSD"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez-Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 
 script_info = {}

tests/test_biplots.py

@@ -5,11 +5,11 @@
 __author__ = "Yoshiki Vazquez Baeza"
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
-__license__ = "GPL"
-__version__ = "0.9.0-dev"
+__license__ = "BSD"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 from numpy import array
 from qiime.parse import parse_classic_otu_table

tests/test_filter.py

@@ -5,11 +5,11 @@
 __author__ = "Yoshiki Vazquez Baeza"
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
-__license__ = "GPL"
-__version__ = "0.9.0-dev"
+__license__ = "BSD"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 from numpy import array
 from emperor.filter import (filter_samples_from_coords,

tests/test_format.py

@@ -5,11 +5,11 @@
 __author__ = "Yoshiki Vazquez Baeza"
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
-__license__ = "GPL"
-__version__ = "0.9.0-dev"
+__license__ = "BSD"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 
 from numpy import array

tests/test_sort.py

@@ -5,11 +5,11 @@
 __author__ = "Yoshiki Vazquez Baeza"
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
-__license__ = "GPL"
-__version__ = "0.9.0-dev"
+__license__ = "BSD"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 
 from numpy import array

tests/test_util.py

@@ -5,11 +5,11 @@
 __author__ = "Yoshiki Vazquez Baeza"
 __copyright__ = "Copyright 2013, The Emperor Project"
 __credits__ = ["Yoshiki Vazquez Baeza"]
-__license__ = "GPL"
-__version__ = "0.9.0-dev"
+__license__ = "BSD"
+__version__ = "0.9.1"
 __maintainer__ = "Yoshiki Vazquez Baeza"
 __email__ = "[email protected]"
-__status__ = "Development"
+__status__ = "Release"
 
 
 from numpy import array