Link to methods.

auspice/_layouts/auspice.html

@@ -243,13 +243,14 @@ <h4>Frequencies</h4>
 		<hr>
 		Built with love by <a href="http://bedford.io">Trevor Bedford</a> and 
 		<a href="https://neherlab.wordpress.com/">Richard Neher</a>. This work is made possible by the 
-		<a href="http://gisaid.org" target="_blank">GISAID Initiative</a> and the open sharing of genetic data by influenza research 
-		groups from all over the world. <a href="/acknowledgements/">We gratefully acknowledge their contributions.</a>
-		Give us a shout at <a href="https://twitter.com/trvrb" target="_blank">@trvrb</a> or 
+		<a href="http://gisaid.org" target="_blank">GISAID Initiative</a> and the open sharing of genetic data by 
+		influenza research groups from all over the world. <a href="/acknowledgements/">We gratefully acknowledge their 
+		contributions.</a> Give us a shout at <a href="https://twitter.com/trvrb" target="_blank">@trvrb</a> or 
 		<a href="https://twitter.com/richardneher" target="_blank">@richardneher</a> with questions or comments. All 
 		<a href="http://github.com/blab/nextflu" target="_blank">source code</a> is freely available under the terms of the 
-		<a href="http://github.com/blab/nextflu/blob/master/LICENSE.txt" target="_blank">GNU Affero General Public License</a>. Data 
-		updated <span id="updated"></span> and processed with commit <span id="commit"></span>.		
+		<a href="http://github.com/blab/nextflu/blob/master/LICENSE.txt" target="_blank">GNU Affero General Public License</a>. 
+		A <a href="/methods/">detailed description of methods</a> is also available. Data  updated <span id="updated"></span> and processed 
+		with commit <span id="commit"></span>.		
 	</div>
 </div>
 

auspice/js/mathjax.config.js

@@ -0,0 +1,35 @@
+// configure mathjax to work with markdown through script tags: `
+
+MathJax.Hub.Config({
+	tex2jax: { skipTags: ['script', 'noscript', 'style', 'textarea', 'pre'], inlineMath: [["$","$"],["\\(","\\)"]] }
+});
+
+MathJax.Hub.Queue(function() {
+	var all = MathJax.Hub.getAllJax(), i;
+	for(i=0; i < all.length; i += 1) {
+		all[i].SourceElement().parentNode.className += ' has-jax';
+	}
+});
+
+// Switch MathJax font to sans serif
+
+MathJax.Hub.Config({
+  "HTML-CSS": {availableFonts: ["TeX"]},
+	  MMLorHTML: {prefer: "HTML"}
+});
+
+MathJax.Hub.Register.StartupHook("HTML-CSS Jax Ready",function () {
+  var VARIANT = MathJax.OutputJax["HTML-CSS"].FONTDATA.VARIANT;
+  VARIANT["normal"].fonts.unshift("MathJax_SansSerif");
+  VARIANT["bold"].fonts.unshift("MathJax_SansSerif-bold");
+  VARIANT["italic"].fonts.unshift("MathJax_SansSerif-italic");
+  VARIANT["-tex-mathit"].fonts.unshift("MathJax_SansSerif-italic");
+});
+
+MathJax.Hub.Register.StartupHook("SVG Jax Ready",function () {
+  var VARIANT = MathJax.OutputJax.SVG.FONTDATA.VARIANT;
+  VARIANT["normal"].fonts.unshift("MathJax_SansSerif");
+  VARIANT["bold"].fonts.unshift("MathJax_SansSerif-bold");
+  VARIANT["italic"].fonts.unshift("MathJax_SansSerif-italic");
+  VARIANT["-tex-mathit"].fonts.unshift("MathJax_SansSerif-italic");
+});