Rewrite data prep Jupyter notebook as a script #14
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Implements the Jupyter notebook for data prep of US variants as a Python script and collection of supporting data (clades to analyze and state name/abbreviation mappings). We can run this script on demand or through a scheduled job on GitHub. The updated README provides examples of how to source from and push to S3 buckets. With a scheduled job, this approach could allow us to fully automate the data preparation for US variants except for occasional updates to the table of clades to analyze.
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Implements the Jupyter notebook for data prep of US variants as a
Python script and collection of supporting data (clades to analyze and
state name/abbreviation mappings). We can run this script on demand or
through a scheduled job on GitHub. The updated README provides examples
of how to source from and push to S3 buckets. With a scheduled job, this
approach could allow us to fully automate the data preparation for US
variants except for occasional updates to the table of clades to
analyze.