don't know how to fix it, works fine for axial

brianmanderson · Jul 21, 2020 · 9c007ff · 9c007ff
1 parent 1979347
commit 9c007ff
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/Image_Array_And_Mask_From_Dicom_RT.py b/Image_Array_And_Mask_From_Dicom_RT.py
@@ -78,7 +78,7 @@ def make_output(self, annotation, i):
             for point in points:
                 output.append(((point[1]) * self.PixelSize[0] + self.mult1 * self.ShiftRows[i]))
                 output.append(((point[0]) * self.PixelSize[1] + self.mult2 * self.ShiftCols[i]))
-                output.append(self.ShiftZ[i])
+                output.append(self.ShiftZ[i] + point[1] * self.PixelSize[0] * Xz + point[0] * self.PixelSize[1] * Yz)
             self.contour_dict[i].append(output)
         hole_annotation = 1 - annotation
         filled_annotation = binary_fill_holes(annotation)
@@ -98,7 +98,7 @@ def make_output(self, annotation, i):
             for point in points:
                 output.append(((point[1]) * self.PixelSize[0] + self.mult1 * self.ShiftRows[i]))
                 output.append(((point[0]) * self.PixelSize[1] + self.mult2 * self.ShiftCols[i]))
-                output.append(self.ShiftZ[i])
+                output.append(self.ShiftZ[i] + point[1] * self.PixelSize[0] * Xz + point[0] * self.PixelSize[1] * Yz)
             self.contour_dict[i].append(output)