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The shiny app is offline
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egonw committed May 8, 2024
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Expand Up @@ -6,11 +6,6 @@ Find the instructions to pull and run the Docker Image at the bottom of this pag
[![docker stars](https://img.shields.io/docker/stars/bigcatum/bridgedb.svg?style=flat-square)](https://hub.docker.com/r/bigcatum/bridgedb)
[![docker pulls](https://img.shields.io/docker/pulls/bigcatum/bridgedb.svg?style=flat-square)](https://hub.docker.com/r/bigcatum/bridgedb)

## Shiny App
Our Webservice is used in a new [RShiny app](https://shiny.bridgedb.org), which also includes mappings for outdated identifiers.

![image](https://github.com/bridgedb/bridgedb.github.io/assets/26277832/22426d90-0dec-4b20-8b7f-67d7a85ccca3)

### Instructions to pull and run the Docker Image

If you want to have the latest version of the Docker Image with the latest ID mapping files, use:
Expand All @@ -24,7 +19,9 @@ In case you want to have a specific version of BridgeDb, you can add the version
sudo docker pull bigcatum/bridgedb:3.0.21-2.1.3
```

Below is the command for running the Docker Image. In the command, change [PORT1] and [PORT2] to configure ports that are not yet in use in your system. If the ports 8183 and 8080 are not yet in use, you can simply use those for [PORT1] and [PORT2] respectively. The environment variable [SERVER_URL] defines the host URL, depending on where the Docker Image will be run. If you do a local deployment, the [SERVER_URL] should be `http://localhost`, with the [PORT1] that you chose.
Below is the command for running the Docker Image. In the command, change [PORT1] and [PORT2] to configure ports that are not yet in use in your system. If the ports 8183 and 8080 are not yet in use, you can simply use those for [PORT1] and [PORT2] respectively.
The environment variable [SERVER_URL] defines the host URL, depending on where the Docker Image will be run. If you do a local deployment, the [SERVER_URL] should be `http://localhost`, with the [PORT1] that you chose.

```shell
sudo docker run --name bridgedb --rm -p [PORT1]:8183 -p [PORT2]:8080 -e SERVER_URL='[SERVER_URL]:[PORT1]' bigcatum/bridgedb:latest
```

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