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Added argument for taking in fetch HTML text from file #548

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merged 1 commit into from
Jan 22, 2024
Merged

Added argument for taking in fetch HTML text from file #548

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25 changes: 17 additions & 8 deletions ingest/cmd/build_curl_command.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,18 +2,18 @@
To build curl commands from copy pasted forms from the biobank website
"""

import sys

FORM_TEXT = """
<form name="fetch" action="https://biota.osc.ox.ac.uk/dataset.cgi" method="post">

<input type="hidden" name="id" value="674757"/>
<input type="hidden" name="s" value="338937"/>
<input type="hidden" name="t" value="1694792960"/>
<input type="hidden" name="i" value="67.244.49.54"/>
<input type="hidden" name="v"
value="37c30236bebda8e98e7c1bc6a9dba69483a659fce26632d202d846c3facb90cb"/>
<input class="btn_glow" type="submit" value="Fetch"/>
</form>
<input type="hidden" name="id" value="67343563">
<input type="hidden" name="s" value="38023627">
<input type="hidden" name="t" value="1262365114">
<input type="hidden" name="i" value="76.66.198.53">
<input type="hidden" name="v" value="dc7d7089413fa4a56c6s301a059148asa81904816804130e7909ec72402">
<input class="btn_glow" type="submit" value="Fetch">
</form>
"""


Expand Down Expand Up @@ -61,5 +61,14 @@ def fields_to_curl(name, action, id, s, t, i, v):
def txt_to_curl(name, txt):
return fields_to_curl(name, **get_fields(txt))

# check to see if an argument was provided (single argument with path to form text in a file)
if len(sys.argv) > 1:
try:
with open (sys.argv[1], "r") as form_text_file:
FORM_TEXT = form_text_file.read()
except:
print(f'This program expects the input argument, if provided, to be a path')
print(f'to a file containing the form data from the ukbiobank website.')
exit(1)

print(txt_to_curl(NAME, FORM_TEXT))
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