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DROID-MVP and DROID-RV #578

Merged
merged 106 commits into from
Dec 20, 2024
Merged

DROID-MVP and DROID-RV #578

merged 106 commits into from
Dec 20, 2024

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alalusim
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Adds in changes to DROID training and inference code used in the DROID-RV and DROID-MVP projects, as well as adding these models to the model zoon.

lucidtronix and others added 30 commits January 13, 2023 12:25
* add .linux .osx and .genes
* categorical and continuous composite TensorMaps, bump version, add ecg phewas to model zoo
#517)

* latent space bias functions moved into exploration file and notebook to use these functions
VSCode to GCP instance instruction
Initial release of code for running inference with DROID

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Co-authored-by: Christopher Reeder <[email protected]>
Co-authored-by: Christopher Reeder <[email protected]>
write t1 maps, remove np.bool
Co-authored-by: Danielle Pace <[email protected]>
@alalusim alalusim requested a review from lucidtronix December 17, 2024 15:31
@lucidtronix lucidtronix marked this pull request as ready for review December 19, 2024 15:27
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LGTM!

@@ -0,0 +1,45 @@
# DROID-RV Inference Example

This is a simple example script demonstrated how to load and run the DROID-RV and DROID-RVEF models. Model training and inference was performed using the code provided in the ML4H [model zoo](https://github.com/broadinstitute/ml4h/tree/master/model_zoo/DROID). The example below was adapted from the DROID inference code.
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"This is a simple example script demonstrated" -> "This simple example script demonstrates"

@@ -0,0 +1,36 @@
# DROID-MVP Inference Example

This is a simple example script demonstrated how to load and run the DROID-MVP model. Model training and inference was performed using the code provided in the ML4H [model zoo](https://github.com/broadinstitute/ml4h/tree/master/model_zoo/DROID). The example below was adapted from the DROID inference code.
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"This is a simple example script demonstrated" -> "This simple example script demonstrates"

@lucidtronix lucidtronix merged commit ae7848b into master Dec 20, 2024
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@lucidtronix lucidtronix deleted the mvp branch December 20, 2024 15:02
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7 participants