Skip to content

Commit

Permalink
Specify plotColData to plot percent mitochondrial reads
Browse files Browse the repository at this point in the history
  • Loading branch information
cutsort authored Nov 1, 2024
1 parent 8326024 commit b398b9f
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion assignments/lab/scrnaseq-bioconductor/assignment/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -103,7 +103,7 @@ Sum the expression of all mitochondrial genes across each cell

**Question 5**: Visualize percent of reads from mitochondria (1 pt)

- Plot the `subsets_Mito_percent` on the y-axis against the `broad_annotation` on the x-axis rotating the x-axis labels using `theme( axis.text.x=element_text( angle=90 ) )` and **submit this plot**
- Use `plotColData()` to plot the `subsets_Mito_percent` on the y-axis against the `broad_annotation` on the x-axis rotating the x-axis labels using `theme( axis.text.x=element_text( angle=90 ) )` and **submit this plot**
- Which cell types may have a higher percentage of mitochondrial reads? Why might this be the case?

### 3. Identify marker genes
Expand Down

0 comments on commit b398b9f

Please sign in to comment.