Finished objectives of 5.7.2018.
- [1] Added 2 more parameters (one for setting the p-value of the t test, the other for setting whether output the whole genes or just the differentially expressed ones)
- [2] Removed the read-in files variables to improve memory usage.
- [3] Changed the separate clusters reading to only read the heads (first few lines).
- [4] Making a separate module expression_t_test() for the expression level detection.
The new command line input will be:
python3 kmSortFile.py [prefix of files] [number of clusters] [p value for t test, default: 0.005] [whether to output only differentially expressed genes (0 or 1), default: 1]Example command line:
python3 kmSortFile.py all_aml_test.preprocessed_KMcluster_output 4 0.005 0