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* added templates and config settings from ASAP Discovery to the docs to improve RTD; updated docstrings throughout; created uniprot module * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * corrected HumanKinaseInfo > KinaseInfo change in test * added RTD badge to README * fixed RTD link * fixed RTD link - non-badge this time * refactored code so that all existing work resides in databases sub-module * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated tests for cbioportal error * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added new description in databases init and changed api.rst to reference missense_kinase_toolkit instead of database sub-module * conformed hgnc and pfam to cbioportal and klifs class structure; UniProt in progress; added notebooks for vignettes and jupyter and ipykernel via poetry * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated notebook to remove error' * re-added databases.ipynb * updated gitattributes to ignore ipynb for code counts * re-updated notebook * updated databases notebook, uniprot and hgnc modules, and documentation in requests_wrapper * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updatd databases notebook to include concept of relational databases; updated klifs to add name instead of None if not found --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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