[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
choderalab · May 2, 2024 · 8eaebe3 · 8eaebe3
1 parent d6dec67
commit 8eaebe3
Show file tree

Hide file tree

Showing 8 changed files with 13 additions and 13 deletions.
diff --git a/docs/_templates/custom-class-template.rst b/docs/_templates/custom-class-template.rst
@@ -29,4 +29,4 @@
       ~{{ name }}.{{ item }}
    {%- endfor %}
    {% endif %}
-   {% endblock %}
+   {% endblock %}
diff --git a/docs/_templates/custom-module-template.rst b/docs/_templates/custom-module-template.rst
@@ -65,4 +65,4 @@
    {{ item }}
 {%- endfor %}
 {% endif %}
-{% endblock %}
+{% endblock %}
diff --git a/docs/api.rst b/docs/api.rst
@@ -6,4 +6,4 @@ API Documentation
    :template: custom-module-template.rst
    :recursive:
 
-   missense_kinase_toolkit
+   missense_kinase_toolkit
diff --git a/docs/conf.py b/docs/conf.py
@@ -218,4 +218,4 @@
     __ https://github.com/choderalab/missense-kinase-toolkit/tree/main/
         """ +
     r"{{ docpath }}"
-)
+)
diff --git a/src/missense_kinase_toolkit/cbioportal.py b/src/missense_kinase_toolkit/cbioportal.py
@@ -31,12 +31,12 @@ def __init__(self):
 
     def _set_api_key(self):
         """Set API key for cBioPortal API.
-        
+
         Returns
         -------
         RequestsClient
             RequestsClient object with API key set
-        
+
         """
         token = config.maybe_get_cbioportal_token()
         http_client = RequestsClient()
@@ -99,7 +99,7 @@ def __init__(
         ----------
         study_id : str
             cBioPortal study ID
-    
+
         Attributes
         ----------
         study_id : str
@@ -142,7 +142,7 @@ def get_and_save_cbioportal_cohort_mutations(
         self,
     ) -> None:
         """Get and save cBioPortal cohort mutations to a CSV file.
-        
+
         Notes
         ----
             The CSV file will be saved in the output directory specified in the configuration file.

diff --git a/src/missense_kinase_toolkit/io_utils.py b/src/missense_kinase_toolkit/io_utils.py
@@ -161,4 +161,4 @@ def parse_iterabc2dataframe(
     df = pd.DataFrame.from_dict(dict_dir)
     df = df[sorted(df.columns.to_list())]
 
-    return df
+    return df
diff --git a/src/missense_kinase_toolkit/klifs.py b/src/missense_kinase_toolkit/klifs.py
@@ -10,7 +10,7 @@ class KLIFS():
     """Class to interact with the KLIFS API."""
     def __init__(self):
         """Initialize KLIFS Class object.
-        
+
         Attributes
         ----------
         url : str
@@ -66,7 +66,7 @@ def __init__(
             Name of the kinase
         species : str
             Species of the kinase; default "Human" but can also be "Mouse"
-        
+
         Attributes
         ----------
         kinase_name : str
@@ -86,7 +86,7 @@ def get_kinase_info(
         self
     ) -> dict[str, str | int | None]:
         """Get information about a kinase from KLIFS.
-        
+
         Returns
         -------
         dict[str, str | int | None]

diff --git a/src/missense_kinase_toolkit/scrapers.py b/src/missense_kinase_toolkit/scrapers.py
@@ -17,7 +17,7 @@ def kinhub(
     -------
     pd.DataFrame
         DataFrame of kinase information
-        
+
     """
     from bs4 import BeautifulSoup
     import numpy as np
-Original file line number
+Diff line change
@@ Expand Up / @@ -218,4 +218,4 @@ @@
         __ https://github.com/choderalab/missense-kinase-toolkit/tree/main/
             """ +
         r"{{ docpath }}"
-    )
+    )