In this project, a neural decoder is developed which takes time series of brain signals and predicts time series of electromyographic signals of different muscles. This is achieved by building a LSTM decoder for offline decoding, and a basic RNN for mimicking an online decoder.
The code can be run either by
- running the main.ipynb in the notebooks folder, or by
- running the main.py file in the src folder
main.py is pure code, whereas main.ipynb contains explanations and a storyline.
├── LICENSE
├── Makefile <- Makefile with commands like `make data` or `make train`
├── README.md <- The top-level README for developers using this project.
├── data
│ ├── external <- Data from third party sources.
│ ├── interim <- Intermediate data that has been transformed.
│ ├── processed <- The final, canonical data sets for modeling.
│ └── raw <- The original, immutable data dump.
│
├── docs <- A default Sphinx project; see sphinx-doc.org for details
│
├── models <- Trained and serialized models, model predictions, or model summaries
│
├── notebooks <- Jupyter notebooks. Naming convention is a number (for ordering),
│ the creator's initials, and a short `-` delimited description, e.g.
│ `1.0-jqp-initial-data-exploration`.
│
├── references <- Data dictionaries, manuals, and all other explanatory materials.
│
├── reports <- Generated analysis as HTML, PDF, LaTeX, etc.
│ └── figures <- Generated graphics and figures to be used in reporting
│
├── requirements.txt <- The requirements file for reproducing the analysis environment, e.g.
│ generated with `pip freeze > requirements.txt`
│
├── setup.py <- makes project pip installable (pip install -e .) so src can be imported
├── src <- Main source code for use in this project.
├── __init__.py <- Makes src a Python module
│
├── data <- Scripts to download or generate data
│ └── make_dataset.py
│
├── features <- Scripts to turn raw data into features for modeling
│ └── build_features.py
│
├── models <- Scripts to train models and then use trained models to make
│ │ predictions and evaluate them with statistical metrics
│ └── train_and_predict_model.py
│ └── metrics.py
│ └── utilities.py
│
└── visualization <- Scripts to create exploratory and results oriented visualizations
└── visualize.py