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Update README.md
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cmzuo11 authored Dec 24, 2023
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Expand Up @@ -72,7 +72,7 @@ You can adapt two different methods to define pathological regions, i.e., tumor

* install the labelme software from the link on Github: https://github.com/wkentaro/labelme, and apply it to manually outline each tumor region based on our defined strategy, and save the annotation into a json file named 'tissue_hires_image.json' of a directory named image_segmentation.

* Define the classification for each spot based on above-generated json file. Here, we use IDC dataset as an example.
* Define the classification for each spot based on above-generated json file. Here, we use IDC dataset as an example. It takes ~34 mins.

```
python Image_cell_segmentation.py --inputPath ../test_data/IDC/ --jsonFile tissue_hires_image.json
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