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fix images
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Aaronearlerichardson committed Feb 12, 2024
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Showing 1 changed file with 11 additions and 11 deletions.
22 changes: 11 additions & 11 deletions docs/GlobalLocal/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ ecog_preprocessing (Mat) → makeTrials_GL (Mat) → BIDS_coding (WSL)

#. Once your files are downloaded and Trials is renamed, open Matlab
and run the **ecog_preprocessing** script *(used for all tasks preprocessing)*
#. Start the same as all other tasks → create a new ``Case` for the
#. Start the same as all other tasks → create a new ``Case`` for the
task (Global Local = **009** ),
#. Fill in all of the case variable information accordingly: **see differences!**

Expand Down Expand Up @@ -74,8 +74,8 @@ ecog_preprocessing (Mat) → makeTrials_GL (Mat) → BIDS_coding (WSL)
* Should already be there if going straight from running ecog_preprocessing –
but if not, double-click on trigger saved in folder
#. Already run ``edfread_fast``
* If not, go back and run this in
ecog_preprocessing & make sure that your ``edf_filename`` variable (path

* If not, go back and run this in ecog_preprocessing & make sure that your ``edf_filename`` variable (path
to EDF) from the case variables is loaded in your workspace before
doing so.
#. Run the first section at the top to load the graph of the triggers
Expand Down Expand Up @@ -198,12 +198,12 @@ ecog_preprocessing (Mat) → makeTrials_GL (Mat) → BIDS_coding (WSL)
pull**

* Make sure you are in the right workspace, should look like this:
#. |image0|
#. |image4|
#. Press **Enter**

#. If you encounter an **error message!**

#. *Message*: 1. |image1|
#. *Message*: 1. |image8|

#. You will need to make sure all of your changes to **ALL scripts in
the workspace** (modified files will have an " **M**" next to them
Expand Down Expand Up @@ -240,12 +240,12 @@ ecog_preprocessing (Mat) → makeTrials_GL (Mat) → BIDS_coding (WSL)
#. Must change from “SentenceRep” default to GlobalLocal (or any
task going forward)
* Use the exact same name as the D_Data folder!
#. **Final** : |image3|
#. **Final** : |image1|

#. **Line 16** : **Comment out (#) whole** **mapfile** **line!**

#. Don’t need for Global Local (will cause error)
#. **Final** : *see full line on script* |image4|
#. **Final** : *see full line on script* |image0|

#. **Line 17** : Change **SUB_IDS=(D#)** D# to correct Subject
D#’s!
Expand Down Expand Up @@ -298,7 +298,7 @@ ecog_preprocessing (Mat) → makeTrials_GL (Mat) → BIDS_coding (WSL)
**sub-D0XXX** folder!

#. i.e. sub-D0100 for Subject D100
#. |image8|
#. |image9|

* This is where all of the finalized BIDS files will go!

Expand All @@ -317,7 +317,7 @@ ecog_preprocessing (Mat) → makeTrials_GL (Mat) → BIDS_coding (WSL)
**Share** PCfolder into **Box → CoganLab → BIDS-1.1_GlobalLocal →
BIDS** folder!

|image9|
|image3|

.. |image0| image:: media/image1.png
.. |image1| image:: media/image2.png
Expand All @@ -327,5 +327,5 @@ ecog_preprocessing (Mat) → makeTrials_GL (Mat) → BIDS_coding (WSL)
.. |image5| image:: media/image6.png
.. |image6| image:: media/image7.png
.. |image7| image:: media/image8.png
.. |image8| image:: media/image10.png
.. |image9| image:: media/image9.png
.. |image8| image:: media/image9.png
.. |image9| image:: media/image10.png

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