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update phoneme sequence #56

Merged
merged 80 commits into from
Feb 26, 2024
Merged

update phoneme sequence #56

merged 80 commits into from
Feb 26, 2024

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Aaronearlerichardson
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Aaronearlerichardson and others added 30 commits April 7, 2022 17:17
@Aaronearlerichardson
Initial changes to read sentence rep data
52ca821
@Aaronearlerichardson
fixed event labels, onset, and duration keywords. Also added a fix to…
0559b29 
… check for .wav extension on stim files and add one if not present.
@Aaronearlerichardson
Added python<3.10 to environment file
55bb9ee
@Aaronearlerichardson
Fixed ieeg type to work in seeg or ecog case
ca3611e
@Aaronearlerichardson
ingored bids and stim folders in channel checking
e3077d4
@Aaronearlerichardson
fixed the event start and end points in the config.json
d9338b7
@Aaronearlerichardson
added check_stims and check_lower to scan stim directory for loose ma…
89654f3 
…tches in case the sound labels don't exactly match the file names
@Aaronearlerichardson
Fully working conversion for subject D53
f346215
@Aaronearlerichardson
fixing zero padding issue for sentence_rep
9174f31
@Aaronearlerichardson
fixed the bash converter
bc8109d
@Aaronearlerichardson
fixed the bash converter
6a1d834
@Aaronearlerichardson
fixed the bash converter script
9b92ac0
@Aaronearlerichardson
Merge pull request #38 from coganlab/Sentence_rep
aa9b564 
Sentence rep
@Aaronearlerichardson
Successully ran D53
3b3e2f5
@Aaronearlerichardson
Successully ran D53 again, event labels are inconsistent. updated env…
f3ea86c 
… and added better error messages. added event label cases to config.json
@Aaronearlerichardson
added script to check Coganlab files for filetypes
bb5cc26
@Aaronearlerichardson
added data to config for neighborhood conversion
f395546
@Aaronearlerichardson
ignoring final_directory_structure
b75fdc2
@Aaronearlerichardson
fixed multi stim problem and added the correct stims
2b446f2
@Aaronearlerichardson
neighborhood sternburg working for D29
09651be
@Aaronearlerichardson
refactored pandas operations to utils.py. Improved clarity of code
73b9658
@Aaronearlerichardson
Merge pull request #40 from coganlab/Neighborhood
853a058 
Neighborhood
@Aaronearlerichardson
changed config and fixed missing column error
3ce386f
@Aaronearlerichardson
refactored the whole mat2tsv function and modularized the functionali…
d603a88 
…ties into the new organize.py. Still some issues with name matching
@Aaronearlerichardson
fixed the acquision error in the edf label
5c6bd91
@Aaronearlerichardson
fixed the acquision error in the edf label
5656dc2
@Aaronearlerichardson
Merge remote-tracking branch 'origin/Neighborhood' into Neighborhood
4ae42d7
@Aaronearlerichardson
fixed some typing issues
1e2758f
@Aaronearlerichardson
Merge pull request #41 from coganlab/Neighborhood
1fcf708 
Neighborhood
@Aaronearlerichardson
Merge branch 'Sentence_rep' of github.com:coganlab/BIDS_coding into S…
7f4a98a 
…entence_rep
Aaronearlerichardson and others added 27 commits September 5, 2023 17:06
@Aaronearlerichardson
fixed to accommodate no append method
e7ed888
@Aaronearlerichardson
removed append method
538ec77
@Aaronearlerichardson
reorganized some stuff
8e26be5
@Aaronearlerichardson
Merge branch 'Sentence_rep' into Global_local
f69a443
@Aaronearlerichardson
Merge pull request #54 from coganlab/Global_local
1901583 
Global local
@Aaronearlerichardson
sentencerep config.json fix
40dfb29
@Aaronearlerichardson
Merge pull request #55 from coganlab/Sentence_rep
098cca3 
Sentence rep
@Aaronearlerichardson
testing fixes
2c3b9f5
@Aaronearlerichardson
added readthedocs
3e9fa7c
@Aaronearlerichardson
added configuration
10aa9a9
@Aaronearlerichardson
pass tests
0f75c9e
@Aaronearlerichardson
rename
8606a33
@Aaronearlerichardson
rename again
02469f3
@Aaronearlerichardson
fixing conf
3104f58
@Aaronearlerichardson
add external links
cb88936
@Aaronearlerichardson
trying to add a ton of docs
a82b9ff
@Aaronearlerichardson
fix tasks
a171e70
@Aaronearlerichardson
fix tasks again
b73f1e0
@Aaronearlerichardson
guide syntax
52f053d
@Aaronearlerichardson
guide syntax changes
7fe18d1
@Aaronearlerichardson
fix images
dfe954a
@Aaronearlerichardson
more edits
1bac1cd
@Aaronearlerichardson
fixed headings
129b653
@Aaronearlerichardson
moved spacings
4963a13
@Aaronearlerichardson
single line paragraphs
327ef7d
@Aaronearlerichardson
one more fix
cd67a77
@Aaronearlerichardson
add more code blocks
cca9dd1
Aaronearlerichardson
Aaronearlerichardson commented Feb 26, 2024
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obvious review additions

@Aaronearlerichardson Aaronearlerichardson merged commit 1be0950 into Phoneme_sequence Feb 26, 2024
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@Aaronearlerichardson