Skip to content

Commit

Permalink
v124-master: update readme
Browse files Browse the repository at this point in the history
  • Loading branch information
dfguan committed Jul 7, 2020
1 parent 28a6010 commit fe8dce2
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -239,7 +239,7 @@ bin/purge_dups -2 -T cutoffs -c PB.base.cov $pri_asm.split.self.paf.gz > dups.be
```
bin/get_seqs dups.bed $pri_asm
```
This command will remove both haplotypic duplications at the ends or in the middle of the contigs. If you just want to remove the duplications at the ends, please use `-e` option. For more options, please refer to `get_seqs -h`.
**Notice** this command will remove haplotypic duplications at the ends and in the middle of the contigs. If you just want to remove the duplications at the ends, please use `-e` option. For more options, please refer to `get_seqs -h`.

### Step 4. Merge hap.fa and $hap_asm and redo the above steps to get a decent haplotig set.

Expand Down

0 comments on commit fe8dce2

Please sign in to comment.