This repository has been archived by the owner on Mar 3, 2024. It is now read-only.
feat: e2e test, build: update tools cicd #4
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Uni-Dock Tools CI/CD | ||
| on: | ||
| push: | ||
| branches: [] | ||
| pull_request: | ||
| branches: [ main ] | ||
| env: | ||
| BASE_IMAGE_VERSION: "0.0.1" | ||
| PYTHON_VERSION: "3.11" | ||
| jobs: | ||
| flake8: | ||
| continue-on-error: true | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: $PYTHON_VERSION | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install flake8 | ||
| - name: Run flake8 formating | ||
| run: | | ||
| flake8 unidock_tools/unidock_tools --exit-zero | ||
| pyright: | ||
| continue-on-error: true | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: $PYTHON_VERSION | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install pyright | ||
| - name: Run pyright check | ||
| id: pyright_check | ||
| working-directory: ./unidock_tools | ||
| run: | | ||
| pyright | ||
| tests: | ||
| if: ${{ always() }} | ||
| needs: [flake8,pyright] | ||
| runs-on: nvidia | ||
| strategy: | ||
| matrix: | ||
| cuda-version: ["12.0.0"] | ||
| container: | ||
| image: docker.io/xmyyn/unidock_tools_base:$BASE_IMAGE_VERSION_cuda${{ matrix.cuda-version }} | ||
| options: --gpus all | ||
| steps: | ||
| - name: checkout repo | ||
| uses: actions/checkout@v4 | ||
| - name: install unidock | ||
| working-directory: ./unidock | ||
| run: | | ||
| mkdir build | ||
| cd build | ||
| cmake .. -G Ninja -DCMAKE_BUILD_TYPE=Release | ||
| cmake --build . | ||
| cmake --install . | ||
| cd .. | ||
| -name: check env | ||
| run: | | ||
| unidock --version | ||
| confgen --version | ||
| which python | ||
| - name: install tools | ||
| working-directory: ./unidock_tools | ||
| run: | | ||
| pip install . | ||
| - name: run unit-test | ||
| run: | | ||
| pip install pytest pytest-cov | ||
| pytest unidock_tools/tests/ut -vv --cov --cov-report term | ||
| - name: run application e2e test | ||
| run: | | ||
| pytest unidock_tools/tests/applications -vv --cov --cov-report term | ||
| build_docker_image: | ||
| needs: tests | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| cuda-version: ["12.0.0"] | ||
| steps: | ||
| - name: log in to docker hub | ||
| uses: docker/login-action@v3 | ||
| if: github.event_name == 'push' | ||
| with: | ||
| username: dptechnology | ||
| password: ${{ secrets.DOCKERHUB_PAT }} | ||
| - name: Set up QEMU | ||
| uses: docker/setup-qemu-action@v3 | ||
| - name: set up docker buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - uses: benjlevesque/[email protected] | ||
| id: short-sha | ||
| with: | ||
| length: 7 | ||
| - name: check commit short sha | ||
| run: echo ${{ steps.short-sha.outputs.sha }} | ||
| - name: build and push container | ||
| uses: docker/build-push-action@v5 | ||
| with: | ||
| platforms: linux/amd64 | ||
| build-args: BASE_IMAGE=xmyyn/unidock_tools_base:$BASE_IMAGE_VERSION_cuda${{ matrix.cuda-version }} | ||
| tags: dptechnology/unidock_tools:${{ steps.short-sha.outputs.sha }},dptechnology/unidock_tools:latest | ||
| file: unidock_tools/containers/Dockerfile | ||
| push: ${{ github.event_name == 'push' }} | ||
