HPC Tutorial

This includes files that were used for the Bridge to the Doctorage HPC Presentation

Here are some links for some online tutorials

HPC

More HPC Tutorial info thanks to Kevin Thorton

https://github.com/ThorntonLab/biocluster

BASH

Links to materials thanks to J.J. Emerson, PhD @ UC Irvine

Michael Stonebank @ University of Surrey

http://www.ee.surrey.ac.uk/Teaching/Unix/

Wikibooks

https://en.wikibooks.org/wiki/A_Quick_Introduction_to_Unix

GITHUB

Introduction to Github by Kevin Thorton (under UC Irvine License)

https://github.com/ThorntonLab/intro2github

PYTHON

Enthought offers some cool video tutorials for basic python and scientific computing using Python. You must register for an academic license

How to request an academic license.

https://store.enthought.com/licenses/academic/

The training website

https://training.enthought.com/

Python Object Oriented Programing

https://realpython.com/python3-object-oriented-programming/#python-objects-instances

Additional links to materials thanks to Kevin Thorton, Phd. @ UC Irvine

Phil Spectors @ UC Berkeley notes on Python:

https://www.stat.berkeley.edu/~spector/python

https://www.stat.berkeley.edu/~spector/pythonslides.pdf

Python Data Analysis Tutorial

Some tutorials on Pandas

http://pandas.pydata.org/pandas-docs/version/0.15/tutorials.html

https://www.tutorialspoint.com/python_pandas/index.htm

Python Graphing utilities Tutorial

Some tutorials on Seaborn and Graphing

http://seaborn.pydata.org/tutorial.html

Steffen Brinkmann notes on Python

https://anonimops.de/PythonCrash/PythonNumpy.pdf

R

Coming soon