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2 changes: 1 addition & 1 deletion README.md
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## UPDATE October 2023
Reference database has been updated to include N1 and N2 clade names (i.e., 2002A vs 2002B; 1998A vs 1998B). [Zeller et al.](https://academic.oup.com/ve/article/7/2/veab090/6384522) and [Hufnagel et al.](https://academic.oup.com/ve/article/9/1/vead015/7059557)

These new reference data include internal gene designations for IAV in swine detected in Europe and Asia. A more comprehensive reference set is available (contact Blake Inderski or Tavis Anderson) that includes private GISAID data.
These new reference data include internal gene designations for IAV in swine detected in Europe and Asia. A more comprehensive reference set is available (please contact Blake Inderski or Tavis Anderson) that includes GISAID data.

## Use
Determines evolutionary origin of influenza A virus genes through inference of maximum likelihood tree and then assignment of a defined genetic clade based on nearest neighbor determined by patristic distances.
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