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GN Immutable (chr,start,end,ref,alt1,alt2) #173

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GN Immutable (chr,start,end,ref,alt1,alt2) #173

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as1000
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@as1000 as1000 commented Mar 20, 2021

Partially addresses issue #157

as1000 added 30 commits March 19, 2021 14:38
@as1000
Update AnnotatedRecord.java
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@as1000
Update GenomeNexusImpl.java
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Update GenomeNexusImpl.java
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Update GenomeNexusImpl.java
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Update AnnotatedRecord.java
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Update MutationRecord.java
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Added GN_Immutable
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Added GN_Immutable
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Update corner_cases.out.uniprot.txt
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Update corner_cases.out.mskcc.txt
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Update corner_cases.out.uniprot.txt
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Update corner_cases.two_tumor_seq_allele.out.mskcc.txt
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Update corner_cases.two_tumor_seq_allele.out.uniprot.txt
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Update data_mutations_extended_100.out.mskcc.txt
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Update data_mutations_extended_100.out.uniprot.nucleotide_context.txt
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Update data_mutations_extended_100.out.uniprot.txt
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as1000 added 28 commits March 22, 2021 14:14
@as1000
Update data_mutations_extended_100.out.uniprot.nucleotide_context.txt
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Update MutationRecord.java
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Update corner_cases.out.uniprot.txt
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Rename GN_Immutable Columns
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Rename GN_Immutable Columns
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Renamed GN_Immutable to Ignore_Genome_Nexus_Original
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Renamed GN_Immutable to Ignore_Genome_Nexus_Original
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Renamed GN_Immutable to Ignore_Genome_Nexus_Original
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Removed GN_Immutable Columns
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Add files via upload
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Update config.yml
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Reverted to Old Version
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Renamed GN_Immutable to IGNORE_Genome_Nexus_Original
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Update corner_cases.two_tumor_seq_allele.out.uniprot.txt
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Update corner_cases.two_tumor_seq_allele.out.uniprot.txt
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Update config.yml
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Added dbSNP_RS
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@sheridancbio
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Hello. user as1000 is not a recognized user in the user groups for this code base. The unit test "genome-nexus-annotation-pipeline" is run on a jenkins server which checks whether the user submitting the PR is a trusted member of the development team [because the PR is run inside of our firewall]. Could someone reach out to us through slack and explain this PR and the user account as1000? Possibly this PR was created only for testing? Can it be closed?

@inodb inodb mentioned this pull request Oct 17, 2022
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@as1000 @sheridancbio