Add version file for grch38_ensembl92

data/grch38_ensembl92/input/annotation_version.txt

@@ -0,0 +1,8 @@
+name	version	type	id	description	url
+VEP	grch38	mirrored	vep	VEP determines the effect of your variants(SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.	https://useast.ensembl.org/info/docs/tools/vep/index.html
+HGNC	2023-10	mirrored	hgnc	The resource for approved human gene nomenclature. Genome Nexus uses HGNC gene symbols in annotation	http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/archive/monthly/tsv/
+Cancer Hotspots	v2	mirrored	cancer_hotspots	A resource for statistically significant mutations in cancer 	https://www.cancerhotspots.org
+3D Hotspots	v2	mirrored	3d_hotspots	A resource for statistically significant mutations clustering in 3d protein structures in cancer	https://www.3dhotspots.org/
+Mutation Assessor	v4	mirrored	mutation_assessor	Mutation Assessor predicts the functional impact of amino-acid substitutions in proteins, such as mutations discovered in cancer or missense polymorphisms.	http://mutationassessor.org/r3/
+My Variant Info	Includes many annotation sources, see https://docs.myvariant.info/en/latest/doc/data.html	external	my_variant_info	MyVariant.info provides simple-to-use REST web services to query/retrieve variant annotation data, aggregated from many popular data resources.	https://myvariant.info
+ClinVar	20230722	mirrored	clinvar	ClinVar aggregates information about genomic variation and its relationship to human health.	https://www.ncbi.nlm.nih.gov/clinvar/

scripts/import_mongo.sh

@@ -53,7 +53,6 @@ fi
 
 # import mutation assessor
 echo "Downloading Mutation assessor data"
-#!/bin/bash
 # Data source: https://drive.google.com/file/d/1V6r65xJFF5fJ7b9JHwqkvCe8wWDrIBhd/view. 
 # The copy is stored in S3 bucket: ttps://genome-nexus-static-data.s3.amazonaws.com/mutationassessor4_for_genome_nexus.tsv.xz
 curl https://genome-nexus-static-data.s3.amazonaws.com/mutationassessor4_for_genome_nexus.tsv.xz -o ${DIR}/../data/common_input/mutationassessor4_for_genome_nexus.tsv.xz