Fix failed regexing of sp. name from URL

glarue · Mar 15, 2021 · 7727943 · 7727943
1 parent 8676891
commit 7727943
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/jgi-query.py b/jgi-query.py
@@ -950,7 +950,7 @@ def download_list(url_list, timeout=120, retries=3):
             sys.exit("No organism specified. Exiting now.")
     else:
         sys.exit("No organism specified. Exiting now.")
-org_regex = re.compile(r'\.jgi.+\.(?:gov|org).+\/(.+)\/(?!\/)')
+org_regex = re.compile(r'\.jgi.+\.(?:gov|org).*\/(.+)\/(?!\/)')
 try:  # see if it's in address form
     # organism = re.search("\.jgi.+\.(?:gov|org)/(.+)/", org_input).group(1)
     organism = org_regex.search(org_input).group(1)