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Typo in deepvariant-fast-pipeline-case-study.md
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PiperOrigin-RevId: 700813586
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danielecook authored and copybara-github committed Nov 27, 2024
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Expand Up @@ -181,13 +181,13 @@ time sudo docker run \
2>&1 | tee /tmp/fast_pipeline.Docker_chr20.log
```

* `-v` allows to map local directory inide docker container.
* `-v` allows to map local directory inside docker container.
* `-e` we need to set `DV_BIN_PATH` environment variable to point to
DeepVariant binaries directory inside the container.
* `--shm-size` sets the size of shared memory available to the container. It
has to be larger than `--buffer_size` x `--num_shards`. In our case
buffer_size is 10M and we run 14 shards, so 2gb would be large enough to
accommodate buffers and all sychronization objects for each shard.
accommodate buffers and all synchronization objects for each shard.

#### `fast_pipeline` command line parameters:

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