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## SpeedSeq AMI | ||
SpeedSeq is available as a public AMI (Amazon Machine Image) on the Amazon Elastic Compute Cloud (EC2). | ||
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1. From the EC2 Dashboard, set your region to N. Virginia and click "Launch Instance" | ||
1. Log in to the [Amazon AWS console](http://aws.amazon.com/) | ||
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2. From the EC2 Dashboard, set your region to N. Virginia and click "Launch Instance" | ||
![EC2 dashboard](etc/launch-01.png?raw=true "EC2 dashboard") | ||
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2. Choose, "Community AMIs" in the sidebar and search for SpeedSeq in the dialog box. | ||
3. Choose, "Community AMIs" in the sidebar and search for SpeedSeq in the dialog box. | ||
![Select SpeedSeq](etc/community_ami-01.png?raw=true "Select SpeedSeq") | ||
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3. Select hardware specifications. For deep whole genomes, we recommend c3.8xlarge (32 vCPUs, 60 GB RAM). For testing purposes any machine with 16 GB RAM is sufficient. | ||
4. Select hardware specifications. For deep whole genomes, we recommend c3.8xlarge (32 vCPUs, 60 GB RAM). For testing purposes any machine with 16 GB RAM is sufficient. | ||
![Instance type](etc/instance_type-01.png?raw=true "Instance type") | ||
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4. Add storage for the data. Note that the SpeedSeq footprint is ~ 26 GB (including the reference genome and GEMINI). | ||
5. Add storage for the data. Note that the SpeedSeq footprint is ~ 26 GB (including the reference genome and GEMINI). | ||
![Add storage](etc/add_storage-01.png?raw=true "Add storage") | ||
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5. Launch the instance and login. | ||
6. Launch the instance and log in. | ||
``` | ||
ssh -i mykey.pem [email protected] | ||
``` | ||
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6. Run the SpeedSeq test script. | ||
7. Run the SpeedSeq test script. | ||
``` | ||
./run_speedseq | ||
``` | ||
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