Merge pull request #134 from information-artifact-ontology/release090…

…62023 OMO release 9th June 2023
information-artifact-ontology · Jun 9, 2023 · d38f114 · d38f114
2 parents 71dfe58 + 02d898e
commit d38f114
Show file tree

Hide file tree

Showing 7 changed files with 167 additions and 13 deletions.
diff --git a/omo-full.json b/omo-full.json
@@ -121,9 +121,9 @@
         "val" : "https://creativecommons.org/publicdomain/zero/1.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2023-05-15"
+        "val" : "2023-06-09"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-05-15/omo-full.json"
+      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-06-09/omo-full.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/IAO_0000002",
@@ -1719,6 +1719,44 @@
           "val" : "2023-03-03"
         } ]
       }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003006",
+      "lbl" : "misspelling",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for common misspellings"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/132"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003007",
+      "lbl" : "misnomer",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/133"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
     }, {
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym",
       "lbl" : "has broad synonym",

diff --git a/omo-full.obo b/omo-full.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: omo/releases/2023-05-15/omo-full.owl
+data-version: omo/releases/2023-06-09/omo-full.owl
 ontology: omo/omo-full
 property_value: defaultLanguage "en" xsd:string
 property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string
@@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He
 property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string
 property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
-property_value: owl:versionInfo "2023-05-15" xsd:string
+property_value: owl:versionInfo "2023-06-09" xsd:string
 
 [Term]
 id: IAO:0000027

diff --git a/omo-full.owl b/omo-full.owl
@@ -12,7 +12,7 @@
      xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omo/omo-full.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-05-15/omo-full.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-06-09/omo-full.owl"/>
         <protege:defaultLanguage>en</protege:defaultLanguage>
         <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
         <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
@@ -52,7 +52,7 @@
         <dc:description xml:lang="en">An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).</dc:description>
         <dc:title xml:lang="en">OBO Metadata Ontology</dc:title>
         <terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
-        <owl:versionInfo>2023-05-15</owl:versionInfo>
+        <owl:versionInfo>2023-06-09</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -665,6 +665,32 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OMO_0003006 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003006">
+        <obo:IAO_0000115>A synonym type for common misspellings</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/132"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>misspelling</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003007 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003007">
+        <obo:IAO_0000115>A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/133"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>misnomer</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.org/dc/elements/1.1/contributor -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>

diff --git a/omo.json b/omo.json
@@ -121,9 +121,9 @@
         "val" : "https://creativecommons.org/publicdomain/zero/1.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2023-05-15"
+        "val" : "2023-06-09"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-05-15/omo.json"
+      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-06-09/omo.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/IAO_0000002",
@@ -1719,6 +1719,44 @@
           "val" : "2023-03-03"
         } ]
       }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003006",
+      "lbl" : "misspelling",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for common misspellings"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/132"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003007",
+      "lbl" : "misnomer",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/133"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
     }, {
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym",
       "lbl" : "has broad synonym",

diff --git a/omo.obo b/omo.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: releases/2023-05-15
+data-version: releases/2023-06-09
 ontology: omo
 property_value: defaultLanguage "en" xsd:string
 property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string
@@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He
 property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string
 property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
-property_value: owl:versionInfo "2023-05-15" xsd:string
+property_value: owl:versionInfo "2023-06-09" xsd:string
 
 [Term]
 id: IAO:0000027

diff --git a/omo.owl b/omo.owl
@@ -12,7 +12,7 @@
      xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-05-15/omo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-06-09/omo.owl"/>
         <protege:defaultLanguage>en</protege:defaultLanguage>
         <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
         <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
@@ -52,7 +52,7 @@
         <dc:description xml:lang="en">An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).</dc:description>
         <dc:title xml:lang="en">OBO Metadata Ontology</dc:title>
         <terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
-        <owl:versionInfo>2023-05-15</owl:versionInfo>
+        <owl:versionInfo>2023-06-09</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -665,6 +665,32 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OMO_0003006 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003006">
+        <obo:IAO_0000115>A synonym type for common misspellings</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/132"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>misspelling</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003007 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003007">
+        <obo:IAO_0000115>A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/133"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>misnomer</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.org/dc/elements/1.1/contributor -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>

diff --git a/src/ontology/omo-edit.owl b/src/ontology/omo-edit.owl
@@ -663,6 +663,32 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OMO_0003006 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003006">
+        <obo:IAO_0000115>A synonym type for common misspellings</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/132"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>misspelling</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003007 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003007">
+        <obo:IAO_0000115>A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/133"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>misnomer</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.org/dc/elements/1.1/contributor -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
@@ -1522,5 +1548,5 @@ No imports</obo:IAO_0000115>
 
 
 
-<!-- Generated by the OWL API (version 4.5.24.2023-01-14T21:28:32Z) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->