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draft: SnpEff Variant Annotation#16

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j23414 wants to merge 14 commits intomasterisugifNF/GATK-flow:masterfrom feat/snpeffisugifNF/GATK-flow:feat/snpeffCopy head branch name to clipboard

+118-17

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Commits on Jan 19, 2024

• added draft snpeff module and subworkflow

  vsatheesh

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  fcf1120

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Commits on Feb 9, 2024

• added draft snpeff module and subworkflow

  

  vsatheesh

  authored and

  j23414

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  baebb58

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• fixup: snpEff casing

  j23414

  committed
  6abeda7

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• Add parameters --annotate, --gff, and --vcf

  j23414

  committed
  4977239

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• Connect a rudimentary call for SnpEff Variant Annotation

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Commits on Dec 1, 2024

• fix: rename snpeff.nf to snpEff.nf to match remote casing

  vsatheesh

  committed
  e6289bc

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• remove local snpEff.nf to prepare for remote version

  vsatheesh

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• Merge remote-tracking branch 'origin/feat/snpeff' into feat/snpeff

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  committed
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Commits on Dec 2, 2024

• adding snpeff container

  vsatheesh

  committed
  a5fba4a

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• update snpeff

  vsatheesh

  committed
  b548318

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• added snpeff workflow

  vsatheesh

  committed
  cdee73e

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• corrected syntax

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Commits on Dec 18, 2024

• fix: add snpeff_params to valid parameters list

  vsatheesh

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  3fa4d42

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• fix: use snpEff container from biocontainers

  vsatheesh

  committed
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