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Hdf5 speedup #527

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Run time

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Job	Run time
lint	22s
Test on ubuntu-latest, Python 3.9	6m 54s
Verify dev env (ubuntu-latest)	1m 32s
Test on ubuntu-latest, Python 3.10	6m 30s
Verify dev env (macos-13)	2m 29s
Test on ubuntu-latest, Python 3.11	7m 1s
Verify dev env (macos-latest)	1m 7s
Test on ubuntu-latest, Python 3.12	6m 49s
Test on macos-13, Python 3.9	11m 49s
Test on macos-13, Python 3.10	17m 4s
Test on macos-13, Python 3.11	12m 50s
Test on macos-13, Python 3.12	10m 24s
Test on macos-latest, Python 3.9	9m 56s
Test on macos-latest, Python 3.10	8m 31s
Test on macos-latest, Python 3.11	10m 2s
Test on macos-latest, Python 3.12	9m 47s
	2h 3m 7s