change paths to run R for conda

jrosell · Feb 29, 2024 · 87d80da · 87d80da
1 parent f79c8af
commit 87d80da
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/conda.Dockerfile b/conda.Dockerfile
@@ -8,10 +8,10 @@ RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
     && bash Miniconda3-latest-Linux-x86_64.sh -b -p /root/miniconda \
     && rm -f Miniconda3-latest-Linux-x86_64.sh \
     && PATH="/root/miniconda/bin:$PATH" \
-    && conda install r-base r-dplyr r-purrr r-readr r-stringr r-ggplot2 r-janitor r-targets r-curl -y --quiet --channel=conda-forge \
-    && conda config --set auto_activate_base true
+    && conda init \
+    && conda install r-base r-dplyr r-purrr r-readr r-stringr r-ggplot2 r-janitor r-targets r-curl -y --quiet --channel=conda-forge
 
 WORKDIR /workspace
 COPY _targets.R functions.R /workspace/
 
-CMD bash -c "R -e 'sessionInfo(); list.files(); targets::tar_make();'"
+CMD PATH=/root/miniconda/bin:$PATH && R -e "sessionInfo(); list.files(); targets::tar_make();"