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@khanlab

Khan Computational Imaging Lab

  • 13 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 53 14

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 17 14

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 114 repositories
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 3 MIT 1 9 (4 issues need help) 2 Updated Jan 16, 2025
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 53 MIT 14 21 (1 issue needs help) 6 Updated Jan 15, 2025
  • SPIMprep-deps Public
    khanlab/SPIMprep-deps’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 13, 2025
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids’s past year of commit activity
    Python 17 MIT 14 21 6 Updated Jan 11, 2025
  • hippunfold_deps Public

    Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)

    khanlab/hippunfold_deps’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Jan 11, 2025
  • wiki Public
    khanlab/wiki’s past year of commit activity
    Ruby 0 MIT 2 2 1 Updated Jan 6, 2025
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 10 1 2 Updated Jan 1, 2025
  • gcnn_dmri Public
    khanlab/gcnn_dmri’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Jan 1, 2025
  • tar2bids-heuristics Public

    Study heuristics for autobids

    khanlab/tar2bids-heuristics’s past year of commit activity
    Python 0 1 0 1 Updated Dec 20, 2024
  • LOBE_analysis Public

    Snakemake workflow for LOBE study

    khanlab/LOBE_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 19, 2024
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