add and export read_pdb to facilitate migration to 2.0

m3g · Nov 25, 2024 · 5cf0a7e · 5cf0a7e
1 parent 0f48b14
commit 5cf0a7e
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diff --git a/src/PDBTools.jl b/src/PDBTools.jl
@@ -15,6 +15,7 @@ using OrderedCollections: OrderedDict
 import AtomsBase: atomic_number, atomic_symbol, atomic_mass, position
 export atomic_number, atomic_symbol, atomic_mass, position
 
+export read_pdb
 export readPDB, writePDB, getseq, wget, edit!, oneletter, threeletter, residuename
 export Atom, printatom, index, index_pdb, name, beta, occup, custom_field, charge, pdb_element
 export Residue, eachresidue, resname, residue, resnum, chain, model, segname
@@ -25,6 +26,8 @@ export formula, stoichiometry
 export Sequence
 export select_with_vmd
 
+const read_pdb = readPDB
+
 # Tools
 export center_of_mass
 export moveto!

diff --git a/src/readPDB.jl b/src/readPDB.jl
@@ -122,5 +122,7 @@ end
     pdbdata = read(pdb_file, String)
     atoms = readPDB(IOBuffer(pdbdata), "protein and name CA")
     @test length(atoms) == 104
+    atoms = read_pdb(pdb_file, "protein and name CA")
+    @test length(atoms) == 104
 end