Use negative log for full reconstruction

CIL and tomopy pass the full dataset, so need to apply the negative log operation themselves.
mantidproject · Jul 7, 2021 · ad9ee8b · ad9ee8b
1 parent dec0411
commit ad9ee8b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/mantidimaging/core/reconstruct/cil_recon.py b/mantidimaging/core/reconstruct/cil_recon.py
@@ -134,7 +134,7 @@ def full(images: Images, cors: List[ScalarCoR], recon_params: ReconstructionPara
 
         # stick it into an AcquisitionData
         data = ag.allocate(None)
-        data.fill(images.data)
+        data.fill(BaseRecon.negative_log(images.data))
         data.reorder('astra')
 
         ig = ag.get_ImageGeometry()

diff --git a/mantidimaging/core/reconstruct/tomopy_recon.py b/mantidimaging/core/reconstruct/tomopy_recon.py
@@ -57,7 +57,7 @@ def full(images: Images, cors: List[ScalarCoR], recon_params: ReconstructionPara
 
         kwargs = {
             'ncore': ncores,
-            'tomo': images.data,
+            'tomo': BaseRecon.negative_log(images.data),
             'sinogram_order': images._is_sinograms,
             'theta': images.projection_angles(recon_params.max_projection_angle).value,
             'center': [cor.value for cor in cors],