use --root-dir instead of extra_config

mne-tools · Jan 17, 2025 · f6d2e6e · f6d2e6e
1 parent cdc81e1
commit f6d2e6e
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/mne_bids_pipeline/tests/test_run.py b/mne_bids_pipeline/tests/test_run.py
@@ -348,14 +348,11 @@ def test_session_specific_mri(
                 dst_file = dst_file.replace(fs_sub, freesurfer_subject_mapping[fs_sub])
             shutil.copyfile(src=walk_root / _file, dst=dst_dir / offset / dst_file)
     # print_dir_tree(new_bids_path.root)  # for debugging
-    # hack in the new bids_root
-    extra_config = dict(bids_root=str(new_bids_path.root))
-    extra_path = tmp_path / "extra_config.py"
-    extra_path.write_text(str(extra_config))
-    monkeypatch.setenv("_MNE_BIDS_STUDY_TESTING_EXTRA_CONFIG", str(extra_path))
     # Run the tests.
     steps = test_options.get("steps", ())
     command = ["mne_bids_pipeline", str(config_path), f"--steps={','.join(steps)}"]
+    # hack in the new bids_root
+    command.append(f"--root-dir={new_bids_path.root}")
     if "--pdb" in sys.argv:
         command.append("--n_jobs=1")
     monkeypatch.setenv("_MNE_BIDS_STUDY_TESTING", "true")