FBXL4 update #129
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name: Phenopacket Q/C | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
env: | |
# Path to directory that contains the cohorts, one cohort per folder. | |
NOTEBOOK_DIR: notebooks | |
jobs: | |
run-qc: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Initialize Python | |
uses: actions/[email protected] | |
with: | |
python-version: '3.12' | |
- name: Install Phenopacket store package | |
run: | | |
python3 -m pip install phenopacket-store-toolkit[release] | |
- name: Run phenopacket Q/C | |
run: | | |
python3 -m ppktstore qc --notebook-dir "${NOTEBOOK_DIR}" |