v1.8.0

Added

• Added track.raster() method

Fixed

• Set clip_on=False to enable Patch to be displayed outside of Axes (#80)
• Fixed unexpected ValueError due to rounding error

v1.7.2

Added

• Added recipe docs for comparative genomics

Fixed

• Set encoding="utf-8" explicitly to avoid Windows default encoding issue

v1.7.1

Change Log

Fixed

• Fixed chord links calc bug in Matrix.parse_fromto_table() method (#75)

v1.7.0

Change Log

Changed

• Dropped python3.8 support
• Switched package manager poetry to rye

Fixed

• Fixed to ignore features that have no location
• Fixed get_seqid2seq() method incorrect return type

v1.6.0

Change Log

Improvement

• Added clear_savefig class variable to enable rendering figure in notebook even when savefig() method is called
• Added is_pseudo_feature() utils function
• Fixed to enable changing text properties of colorbar (#71)

v1.5.0

Change Log

Improvement

• Changed Circos init argument sectors to enable set range tuple
• Removed Circos init argument sector2start_pos
• Added vmin argument to Circos.radar_chart() method

Bug Fix

• Fixed sector range error bug due to rounding error (#67, #27)

v1.4.0

Change Log

New Functionality

• Added Circos.radar_chart() static method for radar chart plot

Improvement

• Fixed to enable set figsize of matplotlib figure
• Added Circos.chord_diagram() method as an alias for Circos.initialize_from_matrix()
• Refactored Genbank and Gff genomic parser class (min_range, max_range is no longer used)

v1.3.0

Change Log

New Functionality

• Added show_confidence() method to TreeViz class (#48)

Improvement

• Fixed too many points in vector curves to reduce SVG file size (#56)

Bug Fix

• Fixed Matrix.parse_fromto_table() to ignore 0 values and not throw an ZeroDivisionError (#49)

v1.2.0

Change Log

New Functionality

• Added circos.link_line() method (#45)

Bug Fix

• Fixed error caused by removal of strand property in SeqFeature (BioPython v1.82)

v1.1.0

Change Log

Improvement

• Added label_formatter argument to Circos.initialize_from_tree() & track.tree() methods
• Fixed track.genomic_features() method to accept SeqFeature (not only list[SeqFeature])
• Fixed example tree file to shorten long species names

Bug Fix

• Fixed calculation error of GC contents and GC skew for short sequence in Genbank class (#43)